NCIMB 11477
NCIMB 11477
规格:
货期:
编号:TS385672
品牌:Testobio
| NCIMB number | NCIMB 11477 |
| Deposit type | Bacteria |
| Type strain | Yes |
| GMO | No |
| Taxon name | Bradyrhizobium japonicum |
| Depositor designation | Erdman3I1b6 |
| Preservation method | Lyophilised |
| Preserved as | Rhizobium japonicum |
| Price band | A |
| Media | 094152 |
| Gas regime | aerobic |
| Incubation period | 7 days |
| Growth factors (and/or information) | YM medium, 25C, 5d: fairly good |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth/Shiny |
| Colony Shape | Circular |
| Colony Elevation | Convex |
| Colony Colour | White |
| Colony Opacity | Semi Translucent |
| Cellular Shape | Slender Rod |
| Cellular Size | medium |
| Cellular Arrangement | Singly |
| Cellular Motility | Yes |
| Gram stain | Gram Negative |
| Cellular (Other) | Parallel Sides, Rounded Ends, Uniform Regularity, Some Intracellular Material |
| Depositor Company | American Type Culture Collection (ATCC) |
| Depositor Address | 12301 Parklawn Drive Rockville Maryland 20852 U.S.A. |
| Source | Autumn akidaizu soybean (Glycine hispida) |
| Isolated by | K. Aso |
| Date of Isolation | 01/01/1929 |
| Date of Accession | 05/01/1979 |
| History | L.W.Erdman |
| Other collection IDs | ATCC10324 DSM30131 IAM12608 LMG6138 PDDCC2684 USDA505 |
| GenInfo Identifier (EMBL, GenBank & DDBJ) | U69638 |
| Yeast? | False |
| K12 | No |
| References | Can. J. Microbiol. (1967) 13 pp235-241 Jordan D.C. (1982) Int. J. syst. Bact. 32 pp136-139. Int J Syst Evol Microbiol, Sep 2009; 59: 2323 - 2328. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts, Nucleic Acids Res 32(Databaseissue), D104-D108, 2004 Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium), Int J Syst Evol Microbiol 58(1), 200-214, 2008 Multilocus sequence analysis of Ensifer and related taxa, Int J Syst Evol Microbiol 57(3), 489-503, 2007 Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences, Int J Syst Evol Microbiol 55(1), 263-270, 2005 Robust markers reflecting phylogeny and taxonomy of rhizobia, PLoS One 7(9), e44936, 2012 Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR, Appl Environ Microbiol 67(8), 3655-3664, 2001 Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester, Int J Syst Evol Microbiol 53(5), 1247-1251, 2003 Development and application of a multilocus sequence analysis method for the identification of genotypes within the genus Bradyrhizobium and for establishing nodule occupancy of soybean (Glycine max L. Merr), Mol Plant Microbe Interact , 2011 Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase, Appl Environ Microbiol 70(4), 2245-2253, 2004 NifH and NifD phylogenies: an evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria, Microbiology 150(5), 1301-1313, 2004 Comparison of sequence analysis of 16S-23S rDNA spacer regions, AFLP analysis and DNA-DNA hybridizations in Bradyrhizobium, Int J Syst Evol Microbiol 51(2), 623-632, 2001 Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T, (misc) Genes (Basel) 2, 763-787, 2011 Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T, Gene 2, 763-787, 2011 Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium, Microbiology 148(8), 2557-2565, 2002 Correlation of Denitrifying Capability with the Existence of nap, nir, nor and nos Genes in Diverse Strains of Soybean Bradyrhizobia, Microbes Environ 21, 174-184, 2006 Diversification of lupine Bradyrhizobium strains: evidence from nodulation gene trees, Appl Environ Microbiol 73(10), 3254-3264, 2007 Grouping of Bradyrhizobium USDA strains by Sequence Analysis of 16S rDNA and 16S-23S rDNA Internal Transcribed Spacer Region, Soil Sci Plant Nutr 50, 517-525, 2004 Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity, Appl Environ Microbiol 69(12), 7257-7265, 2003 Molecular diversity of native bradyrhizobia isolated from Lima bean (Phaseolus lunatus L.) in Peru, Syst Appl Microbiol 29(3), 253-262, 2006 Multilocus sequence analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent, Appl Environ Microbiol 74(22), 6987-6996, 2008 Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum, PLoS Pathog 9(2), e1003204, 2013 Phylogeny and distribution of extra-slow-growing Bradyrhizobium japonicum harboring high copy numbers of RSalpha, RSbeta and IS1631, FEMS Microbiol Ecol 44(2), 191-202, 2003 Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation, Mol Phylogenet Evol 34(1), 29-54, 2005 The nitrogen-fixing gene (nifH) of Rhodopseudomonas palustris: a case of lateral gene transfer?, Microbiology 150(7), 2237-2246, 2004 Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences, Appl Environ Microbiol 69(11), 6740-6749, 2003 |
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| NCIMB number | NCIMB 11477 |
| Deposit type | Bacteria |
| Type strain | Yes |
| GMO | No |
| Taxon name | Bradyrhizobium japonicum |
| Depositor designation | Erdman3I1b6 |
| Preservation method | Lyophilised |
| Preserved as | Rhizobium japonicum |
| Price band | A |
| Media | 094152 |
| Gas regime | aerobic |
| Incubation period | 7 days |
| Growth factors (and/or information) | YM medium, 25C, 5d: fairly good |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth/Shiny |
| Colony Shape | Circular |
| Colony Elevation | Convex |
| Colony Colour | White |
| Colony Opacity | Semi Translucent |
| Cellular Shape | Slender Rod |
| Cellular Size | medium |
| Cellular Arrangement | Singly |
| Cellular Motility | Yes |
| Gram stain | Gram Negative |
| Cellular (Other) | Parallel Sides, Rounded Ends, Uniform Regularity, Some Intracellular Material |
| Depositor Company | American Type Culture Collection (ATCC) |
| Depositor Address | 12301 Parklawn Drive Rockville Maryland 20852 U.S.A. |
| Source | Autumn akidaizu soybean (Glycine hispida) |
| Isolated by | K. Aso |
| Date of Isolation | 01/01/1929 |
| Date of Accession | 05/01/1979 |
| History | L.W.Erdman |
| Other collection IDs | ATCC10324 DSM30131 IAM12608 LMG6138 PDDCC2684 USDA505 |
| GenInfo Identifier (EMBL, GenBank & DDBJ) | U69638 |
| Yeast? | False |
| K12 | No |
| References | Can. J. Microbiol. (1967) 13 pp235-241 Jordan D.C. (1982) Int. J. syst. Bact. 32 pp136-139. Int J Syst Evol Microbiol, Sep 2009; 59: 2323 - 2328. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts, Nucleic Acids Res 32(Databaseissue), D104-D108, 2004 Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium), Int J Syst Evol Microbiol 58(1), 200-214, 2008 Multilocus sequence analysis of Ensifer and related taxa, Int J Syst Evol Microbiol 57(3), 489-503, 2007 Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences, Int J Syst Evol Microbiol 55(1), 263-270, 2005 Robust markers reflecting phylogeny and taxonomy of rhizobia, PLoS One 7(9), e44936, 2012 Specific detection of Bradyrhizobium and Rhizobium strains colonizing rice (Oryza sativa) roots by 16S-23S ribosomal DNA intergenic spacer-targeted PCR, Appl Environ Microbiol 67(8), 3655-3664, 2001 Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester, Int J Syst Evol Microbiol 53(5), 1247-1251, 2003 Development and application of a multilocus sequence analysis method for the identification of genotypes within the genus Bradyrhizobium and for establishing nodule occupancy of soybean (Glycine max L. Merr), Mol Plant Microbe Interact , 2011 Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase, Appl Environ Microbiol 70(4), 2245-2253, 2004 NifH and NifD phylogenies: an evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria, Microbiology 150(5), 1301-1313, 2004 Comparison of sequence analysis of 16S-23S rDNA spacer regions, AFLP analysis and DNA-DNA hybridizations in Bradyrhizobium, Int J Syst Evol Microbiol 51(2), 623-632, 2001 Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T, (misc) Genes (Basel) 2, 763-787, 2011 Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T, Gene 2, 763-787, 2011 Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium, Microbiology 148(8), 2557-2565, 2002 Correlation of Denitrifying Capability with the Existence of nap, nir, nor and nos Genes in Diverse Strains of Soybean Bradyrhizobia, Microbes Environ 21, 174-184, 2006 Diversification of lupine Bradyrhizobium strains: evidence from nodulation gene trees, Appl Environ Microbiol 73(10), 3254-3264, 2007 Grouping of Bradyrhizobium USDA strains by Sequence Analysis of 16S rDNA and 16S-23S rDNA Internal Transcribed Spacer Region, Soil Sci Plant Nutr 50, 517-525, 2004 Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity, Appl Environ Microbiol 69(12), 7257-7265, 2003 Molecular diversity of native bradyrhizobia isolated from Lima bean (Phaseolus lunatus L.) in Peru, Syst Appl Microbiol 29(3), 253-262, 2006 Multilocus sequence analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent, Appl Environ Microbiol 74(22), 6987-6996, 2008 Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum, PLoS Pathog 9(2), e1003204, 2013 Phylogeny and distribution of extra-slow-growing Bradyrhizobium japonicum harboring high copy numbers of RSalpha, RSbeta and IS1631, FEMS Microbiol Ecol 44(2), 191-202, 2003 Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation, Mol Phylogenet Evol 34(1), 29-54, 2005 The nitrogen-fixing gene (nifH) of Rhodopseudomonas palustris: a case of lateral gene transfer?, Microbiology 150(7), 2237-2246, 2004 Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences, Appl Environ Microbiol 69(11), 6740-6749, 2003 |
