NCIMB 12104
NCIMB 12104
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编号:TS388436
品牌:Testobio
| NCIMB number | NCIMB 12104 |
| Deposit type | Bacteria |
| Type strain | Yes |
| GMO | No |
| Taxon name | Ensifer fredii |
| Depositor designation | PRC205 |
| Preservation method | Lyophilised |
| Preserved as | Sinorhizobium fredii |
| Other catalogue information | Formerly type strain of Sinorhizobium fredii |
| Price band | A |
| Media | 152 |
| Gas regime | aerobic |
| Incubation period | 5 days |
| Growth factors (and/or information) | cytophaga 1.5% agar, 25C, 6d: good growth, 24hr - no colonies, 4d - 0.4mm, soft consistency |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth/Shiny |
| Colony Shape | Circular |
| Colony Elevation | Low Convex |
| Colony Colour | Off White |
| Colony Opacity | Translucent |
| Cellular Shape | Slender Rod |
| Cellular Size | large |
| Cellular Arrangement | Groups |
| Cellular Motility | Yes |
| Gram stain | Gram Negative |
| Depositor Company | American Type Culture Collection (ATCC) |
| Depositor Address | 12301 Parklawn Drive Rockville Maryland 20852 U.S.A. |
| Source | "Root nodule of soybean (Glycine max), Honan Province, China" |
| Isolated by | S.N. May |
| Date of Isolation | 01/01/1980 |
| Date of Accession | 13/06/1985 |
| History | S.N.May |
| Other collection IDs | ATCC35423 CCUG27877 DSM 5851 HAMBI2075 IAM13625 ICMP11139 IFO14780 LMG6217 NRRLB-14594 USDA205 |
| GenInfo Identifier (EMBL, GenBank & DDBJ) | D12792 |
| Yeast? | False |
| K12 | No |
| References | Keyser H.H., Bohlool B.B., Hu T.S. and Weber D.F. (1982) Science 215 pp1631-1632. Fast-growing rhizobia isolated from root nodules of soybean. Sadowsky M.J., Keyser H.H. and Bohlool B.B. (1983) Int. J. syst. Bact. 33 pp716-722. Biochemical characterisation of fast and slow growing rhizobia that nodulate soybeans. Scholla M.H. and Elkan G.H. (1984) Int. J. syst. Bact. 34 pp484-486. Rhizobium fredii sp. nov., a fast growing species that effectively nodulates soybeans. Chen W X et al (1988) IJSB 38:392-397 Numerical taxonomic study of fast-growing soybean Rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov. Jarvis B D W et al (1992) IJSB 42:93-96 Phylogeny of fast-growing soybean-nodulating rhizobia supports synonmy of Sinorhizobium and Rhizobium and assignment to Rhizobium fredii De Lajudie P et al (1994) IJSB 44:715-733 Polyphasic taxonomy of Rhizobia: Emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov. Sinorhizobium saheli sp. nov. and Sinorhizobium teranga sp. nov. IJSEM (2002) 52:1689 Young J M (2003) I.J.S.E.M. 53: 2107-2110 A prototype taxonomic microarray targeting the rpsA housekeeping gene permits species identification within the rhizobial genus Ensifer, Syst Appl Microbiol 30(5), 390-400, 2007 Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium), Int J Syst Evol Microbiol 58(1), 200-214, 2008 Discordant phylogenies within the rrn loci of Rhizobia, J Bacteriol 185(10), 2988-2998, 2003 Diversity of Green-Like and Red-Like Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Large-Subunit Genes (cbbL) in Differently Managed Agricultural Soils, Appl Environ Microbiol 71(1), 175-184, 2005 Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico, Syst Appl Microbiol 30(4), 280-290, 2007 Identification of isolates from soybean nodules in Xinjiang Region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii, Int J Syst Evol Microbiol 52(2), 457-462, 2002 Multilocus sequence analysis of Ensifer and related taxa, Int J Syst Evol Microbiol 57(3), 489-503, 2007 Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences, Int J Syst Evol Microbiol 55(1), 263-270, 2005 Phylogenetic relationship and genetic diversity of Agrobacterium spp. isolated in Poland based on gyrB gene sequence analysis and RAPD, Eur J Plant Pathol 133(2), 379-390, 2012 Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia, Int J Syst Evol Microbiol 51(6), 2037-2048, 2001 Polyphasic taxonomy of Rhizobia: emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov, Int J Syst Bacteriol 44, 715-733, 1994 The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination "Sinorhizobium adhaerens" (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion, Int J Syst Evol Microbiol 53(6), 2107-2110, 2003 The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications, Mol Biol Evol 17(2), 309-319, 2000 Ensifer sojae sp. nov., isolated from root nodules of Glycine max grown in saline-alkaline soils, Int J Syst Evol Microbiol 61(8), 1981-1988, 2011 A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis, Int J Syst Evol Microbiol 51(1), 89-103, 2001 Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts, J Gen Appl Microbiol 49(3), 155-179, 2003 Robust markers reflecting phylogeny and taxonomy of rhizobia, PLoS One 7(9), e44936, 2012 Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion, Int J Syst Evol Microbiol 53(4), 1207-1217, 2003 NolR regulates diverse symbiotic signals of Sinorhizobium fredii HH103, Mol Plant Microbe Interact 17(6), 676-685, 2004 Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification, J Gen Appl Microbiol 39, 339-354, 1993 Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase, Appl Environ Microbiol 70(4), 2245-2253, 2004 Genetic diversity of fast-growing rhizobia that nodulate soybean ( Glycine max L. Merr), Arch Microbiol 180(1), 45-52, 2003 Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes, J Bacteriol 183(1), 214-220, 2001 Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum, FEMS Microbiol Ecol 67(1), 103-117, 2009 Site-specific integrative elements of rhizobiophage 16-3 can integrate into proline tRNA (CGG) genes in different bacterial genera, J Bacteriol 184(1), 177-182, 2002 |
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| NCIMB number | NCIMB 12104 |
| Deposit type | Bacteria |
| Type strain | Yes |
| GMO | No |
| Taxon name | Ensifer fredii |
| Depositor designation | PRC205 |
| Preservation method | Lyophilised |
| Preserved as | Sinorhizobium fredii |
| Other catalogue information | Formerly type strain of Sinorhizobium fredii |
| Price band | A |
| Media | 152 |
| Gas regime | aerobic |
| Incubation period | 5 days |
| Growth factors (and/or information) | cytophaga 1.5% agar, 25C, 6d: good growth, 24hr - no colonies, 4d - 0.4mm, soft consistency |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth/Shiny |
| Colony Shape | Circular |
| Colony Elevation | Low Convex |
| Colony Colour | Off White |
| Colony Opacity | Translucent |
| Cellular Shape | Slender Rod |
| Cellular Size | large |
| Cellular Arrangement | Groups |
| Cellular Motility | Yes |
| Gram stain | Gram Negative |
| Depositor Company | American Type Culture Collection (ATCC) |
| Depositor Address | 12301 Parklawn Drive Rockville Maryland 20852 U.S.A. |
| Source | "Root nodule of soybean (Glycine max), Honan Province, China" |
| Isolated by | S.N. May |
| Date of Isolation | 01/01/1980 |
| Date of Accession | 13/06/1985 |
| History | S.N.May |
| Other collection IDs | ATCC35423 CCUG27877 DSM 5851 HAMBI2075 IAM13625 ICMP11139 IFO14780 LMG6217 NRRLB-14594 USDA205 |
| GenInfo Identifier (EMBL, GenBank & DDBJ) | D12792 |
| Yeast? | False |
| K12 | No |
| References | Keyser H.H., Bohlool B.B., Hu T.S. and Weber D.F. (1982) Science 215 pp1631-1632. Fast-growing rhizobia isolated from root nodules of soybean. Sadowsky M.J., Keyser H.H. and Bohlool B.B. (1983) Int. J. syst. Bact. 33 pp716-722. Biochemical characterisation of fast and slow growing rhizobia that nodulate soybeans. Scholla M.H. and Elkan G.H. (1984) Int. J. syst. Bact. 34 pp484-486. Rhizobium fredii sp. nov., a fast growing species that effectively nodulates soybeans. Chen W X et al (1988) IJSB 38:392-397 Numerical taxonomic study of fast-growing soybean Rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov. Jarvis B D W et al (1992) IJSB 42:93-96 Phylogeny of fast-growing soybean-nodulating rhizobia supports synonmy of Sinorhizobium and Rhizobium and assignment to Rhizobium fredii De Lajudie P et al (1994) IJSB 44:715-733 Polyphasic taxonomy of Rhizobia: Emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov. Sinorhizobium saheli sp. nov. and Sinorhizobium teranga sp. nov. IJSEM (2002) 52:1689 Young J M (2003) I.J.S.E.M. 53: 2107-2110 A prototype taxonomic microarray targeting the rpsA housekeeping gene permits species identification within the rhizobial genus Ensifer, Syst Appl Microbiol 30(5), 390-400, 2007 Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium), Int J Syst Evol Microbiol 58(1), 200-214, 2008 Discordant phylogenies within the rrn loci of Rhizobia, J Bacteriol 185(10), 2988-2998, 2003 Diversity of Green-Like and Red-Like Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Large-Subunit Genes (cbbL) in Differently Managed Agricultural Soils, Appl Environ Microbiol 71(1), 175-184, 2005 Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico, Syst Appl Microbiol 30(4), 280-290, 2007 Identification of isolates from soybean nodules in Xinjiang Region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii, Int J Syst Evol Microbiol 52(2), 457-462, 2002 Multilocus sequence analysis of Ensifer and related taxa, Int J Syst Evol Microbiol 57(3), 489-503, 2007 Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences, Int J Syst Evol Microbiol 55(1), 263-270, 2005 Phylogenetic relationship and genetic diversity of Agrobacterium spp. isolated in Poland based on gyrB gene sequence analysis and RAPD, Eur J Plant Pathol 133(2), 379-390, 2012 Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia, Int J Syst Evol Microbiol 51(6), 2037-2048, 2001 Polyphasic taxonomy of Rhizobia: emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov, Int J Syst Bacteriol 44, 715-733, 1994 The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination "Sinorhizobium adhaerens" (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion, Int J Syst Evol Microbiol 53(6), 2107-2110, 2003 The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications, Mol Biol Evol 17(2), 309-319, 2000 Ensifer sojae sp. nov., isolated from root nodules of Glycine max grown in saline-alkaline soils, Int J Syst Evol Microbiol 61(8), 1981-1988, 2011 A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis, Int J Syst Evol Microbiol 51(1), 89-103, 2001 Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts, J Gen Appl Microbiol 49(3), 155-179, 2003 Robust markers reflecting phylogeny and taxonomy of rhizobia, PLoS One 7(9), e44936, 2012 Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion, Int J Syst Evol Microbiol 53(4), 1207-1217, 2003 NolR regulates diverse symbiotic signals of Sinorhizobium fredii HH103, Mol Plant Microbe Interact 17(6), 676-685, 2004 Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification, J Gen Appl Microbiol 39, 339-354, 1993 Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase, Appl Environ Microbiol 70(4), 2245-2253, 2004 Genetic diversity of fast-growing rhizobia that nodulate soybean ( Glycine max L. Merr), Arch Microbiol 180(1), 45-52, 2003 Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes, J Bacteriol 183(1), 214-220, 2001 Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum, FEMS Microbiol Ecol 67(1), 103-117, 2009 Site-specific integrative elements of rhizobiophage 16-3 can integrate into proline tRNA (CGG) genes in different bacterial genera, J Bacteriol 184(1), 177-182, 2002 |
