| NCIMB number | NCIMB 8253 |
| Deposit type | Bacteria |
| Type strain | Yes |
| GMO | No |
| Taxon name | Rhodobacter sphaeroides |
| Depositor designation | Original |
| Preservation method | Lyophilised |
| Preserved as | Rhodopseudomonas sphaeroides |
| Price band | B |
| Media | 027 |
| Gas regime | anaerobic |
| Growth factors (and/or information) | light |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth/Shiny |
| Colony Shape | Circular |
| Colony Elevation | Low Convex |
| Colony Colour | Pink-Red |
| Colony Opacity | Opaque |
| Cellular Shape | Rods |
| Cellular Size | small-medium |
| Cellular Arrangement | Single |
| Gram stain | Gram Negative |
| Depositor Name | S.R.Elsden |
| Depositor Company | University of Sheffield |
| Depositor Address | ARC Unit of Microbiology Sheffield U.K. |
| Date of Accession | 16/11/1951 |
| History | C.B.van Niel |
| Other collection IDs | ATCC11167 ATCC14690 ATCC17023 DSM158 HMSATH.2.4.1 IFO12203 NCIMB8287 |
| Yeast? | False |
| K12 | No |
| References | Lascelles J. (1956) Biochem J. 62 p78 Lascelles J. (1959) Biochem J. 72 p508 Lascelles J. (1960) J. gen. Microbiol. 23 pp487-498 Williamson and Krebs (1961) Biochem J. 80 p540 Carr N.G. (1962) Biochim. Biophys. Acta 52 pp604-606. Williamson et al (1962) Biochem J. 82 p90-96. Haneis A.R. and Bartley (1962) Biochem. J. 84 p238. The Fatty acids of Rhodopseudomonas particles. Neuberger A. and Tair G.H. (1962) Biochem J. 89 p317. Marriot J., Neuberger A. and Tait G.H. (1969) Biochem. J. 111 p385 Ellwood D.C. (1970) J. gen. Microbiol. 60 pp373-380. The Distribution of 2-keto-3-deoxy-octonic acid in bacterial walls. Tait G.H. (1970) Biochem J. 118 p819. Glycine decarboxylase in R. spheroides and in rat liver mitochondria. Lascelles J. and Werthiels D. (1971) Biochem. Biophys. Acta 226(2) p328. Mutant strains of R. spheroides which form Photosynthetic pigments aerobically in the dark. Growth characteristics and enzymic activities. Robinson A. and Sykes J. (1971) Biochem. biophys. Acta 238 p99. A study of the atypical ribosomal RNA components of R. spheroides. Peters G.A. and Cellarius R.A. (1971) Biochem. biophys. Acta 256 pp544-547. The ubiquinone homologue of the green mutant of R. spheroides. English L.S. et al (1971) Proc. Biochem. Soc. Biochem J. 125 p42. Aggregated states of chromatophore membrane protein from R. spheroides. Tait G.H. (1972) Biochem J. 128 p1159 Sogin M.L. et al (1972) J. Bact. 112 p13 Niederman R.A. et al (1972) Arch. Biochem. Biophys. 152 p547 Gorchein A. (1972) Biochem J. 127 pp97-106. Magnesium protoporphyrin chelatase activity in R. spheroides. Studies with whole cells. Hatch T and Lascelles J. (1972) Arch. Biochem. Biophys. 150 pp147-153 Yubishi T and Yoneyama Y. (1972) Arch. Biochem. Biophys. 150 pp77-85 Brockmann H. Jr and Knobloch G. (1972) Arch. Mikrobiol. 85 pp123-126 Singh R.K. et al (1973) Biochem J. 132 p649 Davies R.C. and Neuberger A. (1973) Biochem. J. 133 p471 Robinson A. and Sykes J. (1973) Biochem. J. 133 p739 Singh R.K. et al (1973) Biochem. J. 136 p413 Niederman R.A. (1974) J. Bact. 117 pp19-28 Guest J.R. (1974) J. gen. Microbiol. 81 p513 Neuberger A. et al (1973) Biochem J. 136 p477 Takemoto J. and Lascelles J. (1974) Arch. Biochem. Biophys. 163 pp507 & 515 Arch. Microbiol. 1996, vol 165, no 4, pp 235-242 Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov., Int J Syst Evol Microbiol 56, 827-839, 2006 Identification of "Haematobacter," a new genus of aerobic Gram-negative rods isolated from clinical specimens, and reclassification of Rhodobacter massiliensis as "Haematobacter massiliensis comb. nov.", J Clin Microbiol 45(4), 1238-1243, 2007 (2S)-Methylsuccinyl-CoA dehydrogenase closes the ethylmalonyl-CoA pathway for acetyl-CoA assimilation, Mol Microbiol 73(6), 992-1008, 2009 Assembly of cytochrome-c oxidase in the absence of assembly protein Surf1p leads to loss of the active site heme, J Biol Chem 280(18), 17652-17656, 2005 Biochemical characterization of the decaprenyl diphosphate synthase of Rhodobacter sphaeroides for coenzyme Q(10) production, Appl Microbiol Biotechnol 73(4), 796-806, 2006 Characterisation of a Rrhodobacter sphaeroides gene that encodes a product resembling Eescherichia coli cytochrome b(561) and R. sphaeroides cytochrome b(562), FEMS Microbiol Lett 189(2), 239-246, 2000 Control of hemA expression in Rhodobacter sphaeroides 2.4.1: effect of a transposon insertion in the hbdA gene, J Bacteriol 183(5), 1568-1576, 2001 Digging deeper: uncovering genetic loci which modulate photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1, Microbiology 149(4), 949-960, 2003 DNA sequence analysis of the photosynthesis region of Rhodobacter sphaeroides 2.4.1, Nucleic Acids Res 28(4), 862-867, 2000 Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases, J Biol Chem 283(47), 32283-32293, 2008 Finished bacterial genomes from shotgun sequence data, Genome Res 22(11), 22829535, 2012 Genetic and phenotypic analyses of the rdx locus of Rhodobacter sphaeroides 2.4.1, J Bacteriol 182(12), 3475-3481, 2000 Heme O synthase and heme A synthase from Bacillus subtilis and Rhodobacter sphaeroides interact in Escherichia coli, Biochemistry 43(42), 13541-13548, 2004 Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria, J Bacteriol 190(4), 1366-1374, 2008 Multiple chromosomes in bacteria. The yin and yang of trp gene localization in Rhodobacter sphaeroides 2.4.1, Genetics 153(2), 525-538, 1999 Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsch and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov.), Syst Appl Microbiol 29(3), 207-215, 2006 Respiratory pathways of Rhodobacter sphaeroides 2.4.1(T): identification and characterization of genes encoding quinol oxidases, FEMS Microbiol Lett 192(2), 205-210, 2000 Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome, J Bacteriol 194(24), 7016-7017, 2012 Rhodobacter sphaeroides uses a reductive route via propionyl coenzyme A to assimilate 3-hydroxypropionate, J Bacteriol 194(2), 225-232, 2012 Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway, Proc Natl Acad Sci U S A 104(25), 10631-10636, 2007 The apparent malate synthase activity of Rhodobacter sphaeroides is due to two paralogous enzymes, (3S)-Malyl-coenzyme A (CoA)/{beta}-methylmalyl-CoA lyase and (3S)- Malyl-CoA thioesterase, J Bacteriol 192(5), 1249-1258, 2010 The aquatic budding bacterium Blastobacter denitrificans is a nitrogen-fixing symbiont of Aeschynomene indica, Appl Environ Microbiol 68(3), 1132-1136, 2002 The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor, J Mol Biol 313(3), 485-499, 2001 The membrane-attached electron carrier cytochrome cy from Rhodobacter sphaeroides is functional in respiratory but not in photosynthetic electron transfer, Proc Natl Acad Sci U S A 96(8), 4348-4353, 1999 Two enzymes of diacylglyceryl-O-4-(N,N,N,-trimethyl)homoserine biosynthesis are encoded by btaA and btaB in the purple bacterium Rhodobacter sphaeroides, Proc Natl Acad Sci U S A 98(10), 5910-5915, 2001 |
| PubMed Publication | https://www.ncbi.nlm.nih.gov/m/pubmed/20384278https://www.ncbi.nlm.nih.gov/m/pubmed/20180320 |
| NCIMB number | NCIMB 8253 |
| Deposit type | Bacteria |
| Type strain | Yes |
| GMO | No |
| Taxon name | Rhodobacter sphaeroides |
| Depositor designation | Original |
| Preservation method | Lyophilised |
| Preserved as | Rhodopseudomonas sphaeroides |
| Price band | B |
| Media | 027 |
| Gas regime | anaerobic |
| Growth factors (and/or information) | light |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth/Shiny |
| Colony Shape | Circular |
| Colony Elevation | Low Convex |
| Colony Colour | Pink-Red |
| Colony Opacity | Opaque |
| Cellular Shape | Rods |
| Cellular Size | small-medium |
| Cellular Arrangement | Single |
| Gram stain | Gram Negative |
| Depositor Name | S.R.Elsden |
| Depositor Company | University of Sheffield |
| Depositor Address | ARC Unit of Microbiology Sheffield U.K. |
| Date of Accession | 16/11/1951 |
| History | C.B.van Niel |
| Other collection IDs | ATCC11167 ATCC14690 ATCC17023 DSM158 HMSATH.2.4.1 IFO12203 NCIMB8287 |
| Yeast? | False |
| K12 | No |
| References | Lascelles J. (1956) Biochem J. 62 p78 Lascelles J. (1959) Biochem J. 72 p508 Lascelles J. (1960) J. gen. Microbiol. 23 pp487-498 Williamson and Krebs (1961) Biochem J. 80 p540 Carr N.G. (1962) Biochim. Biophys. Acta 52 pp604-606. Williamson et al (1962) Biochem J. 82 p90-96. Haneis A.R. and Bartley (1962) Biochem. J. 84 p238. The Fatty acids of Rhodopseudomonas particles. Neuberger A. and Tair G.H. (1962) Biochem J. 89 p317. Marriot J., Neuberger A. and Tait G.H. (1969) Biochem. J. 111 p385 Ellwood D.C. (1970) J. gen. Microbiol. 60 pp373-380. The Distribution of 2-keto-3-deoxy-octonic acid in bacterial walls. Tait G.H. (1970) Biochem J. 118 p819. Glycine decarboxylase in R. spheroides and in rat liver mitochondria. Lascelles J. and Werthiels D. (1971) Biochem. Biophys. Acta 226(2) p328. Mutant strains of R. spheroides which form Photosynthetic pigments aerobically in the dark. Growth characteristics and enzymic activities. Robinson A. and Sykes J. (1971) Biochem. biophys. Acta 238 p99. A study of the atypical ribosomal RNA components of R. spheroides. Peters G.A. and Cellarius R.A. (1971) Biochem. biophys. Acta 256 pp544-547. The ubiquinone homologue of the green mutant of R. spheroides. English L.S. et al (1971) Proc. Biochem. Soc. Biochem J. 125 p42. Aggregated states of chromatophore membrane protein from R. spheroides. Tait G.H. (1972) Biochem J. 128 p1159 Sogin M.L. et al (1972) J. Bact. 112 p13 Niederman R.A. et al (1972) Arch. Biochem. Biophys. 152 p547 Gorchein A. (1972) Biochem J. 127 pp97-106. Magnesium protoporphyrin chelatase activity in R. spheroides. Studies with whole cells. Hatch T and Lascelles J. (1972) Arch. Biochem. Biophys. 150 pp147-153 Yubishi T and Yoneyama Y. (1972) Arch. Biochem. Biophys. 150 pp77-85 Brockmann H. Jr and Knobloch G. (1972) Arch. Mikrobiol. 85 pp123-126 Singh R.K. et al (1973) Biochem J. 132 p649 Davies R.C. and Neuberger A. (1973) Biochem. J. 133 p471 Robinson A. and Sykes J. (1973) Biochem. J. 133 p739 Singh R.K. et al (1973) Biochem. J. 136 p413 Niederman R.A. (1974) J. Bact. 117 pp19-28 Guest J.R. (1974) J. gen. Microbiol. 81 p513 Neuberger A. et al (1973) Biochem J. 136 p477 Takemoto J. and Lascelles J. (1974) Arch. Biochem. Biophys. 163 pp507 & 515 Arch. Microbiol. 1996, vol 165, no 4, pp 235-242 Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov., Int J Syst Evol Microbiol 56, 827-839, 2006 Identification of "Haematobacter," a new genus of aerobic Gram-negative rods isolated from clinical specimens, and reclassification of Rhodobacter massiliensis as "Haematobacter massiliensis comb. nov.", J Clin Microbiol 45(4), 1238-1243, 2007 (2S)-Methylsuccinyl-CoA dehydrogenase closes the ethylmalonyl-CoA pathway for acetyl-CoA assimilation, Mol Microbiol 73(6), 992-1008, 2009 Assembly of cytochrome-c oxidase in the absence of assembly protein Surf1p leads to loss of the active site heme, J Biol Chem 280(18), 17652-17656, 2005 Biochemical characterization of the decaprenyl diphosphate synthase of Rhodobacter sphaeroides for coenzyme Q(10) production, Appl Microbiol Biotechnol 73(4), 796-806, 2006 Characterisation of a Rrhodobacter sphaeroides gene that encodes a product resembling Eescherichia coli cytochrome b(561) and R. sphaeroides cytochrome b(562), FEMS Microbiol Lett 189(2), 239-246, 2000 Control of hemA expression in Rhodobacter sphaeroides 2.4.1: effect of a transposon insertion in the hbdA gene, J Bacteriol 183(5), 1568-1576, 2001 Digging deeper: uncovering genetic loci which modulate photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1, Microbiology 149(4), 949-960, 2003 DNA sequence analysis of the photosynthesis region of Rhodobacter sphaeroides 2.4.1, Nucleic Acids Res 28(4), 862-867, 2000 Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases, J Biol Chem 283(47), 32283-32293, 2008 Finished bacterial genomes from shotgun sequence data, Genome Res 22(11), 22829535, 2012 Genetic and phenotypic analyses of the rdx locus of Rhodobacter sphaeroides 2.4.1, J Bacteriol 182(12), 3475-3481, 2000 Heme O synthase and heme A synthase from Bacillus subtilis and Rhodobacter sphaeroides interact in Escherichia coli, Biochemistry 43(42), 13541-13548, 2004 Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria, J Bacteriol 190(4), 1366-1374, 2008 Multiple chromosomes in bacteria. The yin and yang of trp gene localization in Rhodobacter sphaeroides 2.4.1, Genetics 153(2), 525-538, 1999 Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsch and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov.), Syst Appl Microbiol 29(3), 207-215, 2006 Respiratory pathways of Rhodobacter sphaeroides 2.4.1(T): identification and characterization of genes encoding quinol oxidases, FEMS Microbiol Lett 192(2), 205-210, 2000 Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome, J Bacteriol 194(24), 7016-7017, 2012 Rhodobacter sphaeroides uses a reductive route via propionyl coenzyme A to assimilate 3-hydroxypropionate, J Bacteriol 194(2), 225-232, 2012 Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway, Proc Natl Acad Sci U S A 104(25), 10631-10636, 2007 The apparent malate synthase activity of Rhodobacter sphaeroides is due to two paralogous enzymes, (3S)-Malyl-coenzyme A (CoA)/{beta}-methylmalyl-CoA lyase and (3S)- Malyl-CoA thioesterase, J Bacteriol 192(5), 1249-1258, 2010 The aquatic budding bacterium Blastobacter denitrificans is a nitrogen-fixing symbiont of Aeschynomene indica, Appl Environ Microbiol 68(3), 1132-1136, 2002 The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor, J Mol Biol 313(3), 485-499, 2001 The membrane-attached electron carrier cytochrome cy from Rhodobacter sphaeroides is functional in respiratory but not in photosynthetic electron transfer, Proc Natl Acad Sci U S A 96(8), 4348-4353, 1999 Two enzymes of diacylglyceryl-O-4-(N,N,N,-trimethyl)homoserine biosynthesis are encoded by btaA and btaB in the purple bacterium Rhodobacter sphaeroides, Proc Natl Acad Sci U S A 98(10), 5910-5915, 2001 |
| PubMed Publication | https://www.ncbi.nlm.nih.gov/m/pubmed/20384278https://www.ncbi.nlm.nih.gov/m/pubmed/20180320 |