LOCUS Exported 5708 bp ds-DNA circular SYN 13-MAY-2021
DEFINITION synthetic circular DNA
ACCESSION .
VERSION .
KEYWORDS pSMT3-M
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5708)
AUTHORS Carroll P, Schreuder LJ, Muwanguzi-Karugaba J, Wiles S, Robertson
BD, Ripoll J, Ward TH, Bancroft GJ, Schaible UE, Parish T
TITLE Sensitive detection of gene expression in mycobacteria under
replicating and non-replicating conditions using optimized far-red
reporters.
JOURNAL PLoS One. 2010 . 5(3):e9823.
PUBMED 20352111
REFERENCE 2 (bases 1 to 5708)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "PLoS One.
2010 . 5(3):e9823."
FEATURES Location/Qualifiers
source 1..5708
/organism="synthetic DNA construct"
/mol_type="other DNA"
primer_bind complement(436..452)
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"
primer_bind complement(437..453)
/label=pBluescriptKS
/note="For pBluescript vector"
rep_origin 4672..5260
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
primer_bind 5161..5180
/label=pBR322ori-F
/note="pBR322 origin, forward primer"
primer_bind 5414..5431
/label=L4440
/note="L4440 vector, forward primer"
protein_bind 5548..5569
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 5584..5614
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 5622..5638
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 5627..5649
/label=M13/pUC Reverse
/note="In lacZ gene"
primer_bind 5646..5662
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
primer_bind 5646..5662
/label=M13 Reverse
/note="In lacZ gene. Also called M13-rev"
LOCUS Exported 5708 bp ds-DNA circular SYN 13-MAY-2021
DEFINITION synthetic circular DNA
ACCESSION .
VERSION .
KEYWORDS pSMT3-M
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5708)
AUTHORS Carroll P, Schreuder LJ, Muwanguzi-Karugaba J, Wiles S, Robertson
BD, Ripoll J, Ward TH, Bancroft GJ, Schaible UE, Parish T
TITLE Sensitive detection of gene expression in mycobacteria under
replicating and non-replicating conditions using optimized far-red
reporters.
JOURNAL PLoS One. 2010 . 5(3):e9823.
PUBMED 20352111
REFERENCE 2 (bases 1 to 5708)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "PLoS One.
2010 . 5(3):e9823."
FEATURES Location/Qualifiers
source 1..5708
/organism="synthetic DNA construct"
/mol_type="other DNA"
primer_bind complement(436..452)
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"
primer_bind complement(437..453)
/label=pBluescriptKS
/note="For pBluescript vector"
rep_origin 4672..5260
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
primer_bind 5161..5180
/label=pBR322ori-F
/note="pBR322 origin, forward primer"
primer_bind 5414..5431
/label=L4440
/note="L4440 vector, forward primer"
protein_bind 5548..5569
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 5584..5614
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 5622..5638
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 5627..5649
/label=M13/pUC Reverse
/note="In lacZ gene"
primer_bind 5646..5662
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
primer_bind 5646..5662
/label=M13 Reverse
/note="In lacZ gene. Also called M13-rev"