Taton A, Unglaub F, Wright NE, Zeng WY, Paz-Yepez J, Brahamsha B, Palenik B, Peterson TC, Haerizadeh F, Golden SS, Golden JW.
pCVD034 载体载体图谱
pCVD034 载体载体序列
LOCUS Exported 3493 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Broad host range vector vector pCVD034, complete sequence.
ACCESSION KM017909
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3493)
AUTHORS Taton A, Unglaub F, Wright NE, Zeng WY, Paz-Yepez J, Brahamsha B,
Palenik B, Peterson TC, Haerizadeh F, Golden SS, Golden JW.
TITLE Broad-host-range vector system for synthetic biology and
biotechnology in cyanobacteria
JOURNAL Nucleic Acids Res. (2014) In press
PUBMED 25074377
REFERENCE 2 (bases 1 to 3493)
AUTHORS Taton A, Unglaub F, Wright N, Zeng WY, Paz Yepes J, Brahamsha B,
Palenik B, Peterson T, Haerizadeh F, Golden SS, Golden JW.
TITLE Direct Submission
JOURNAL Submitted (17-JUN-2014) Division of Biological Sciences, University
of California, San Diego, 9500 Gilman Dr., La Jolla, CA 92093, USA
REFERENCE 3 (bases 1 to 3493)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3493
/organism="Broad host range vector vector pCVD034"
/mol_type="other DNA"
/note="PpsbAI-LTRBS-GFPmut2 is a functional device where
GFPmut2 is driven by the PpsbAI promoter isolated from
Synechococcus elongatus PCC7942; RBS and flanking sequences
from the pENTR/SD/D-Topo vector"
/db_xref="taxon:1531892"
primer_bind 293..309
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 320..338
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
misc_feature 389..394
/label=EcoRV
/note="EcoRV"
misc_feature 392..1498
/note="CVD-cassette; device for the GC-adaptor assembly:
expression/reporter cassette, promoter-reporter module,
custom sequence"
misc_feature 392..412
/note="C2G; GC-adaptor for seamless assembly, flanking
antibiotic resistance markers, functional devices or custom
sequences; synthetic"
misc_feature 413..418
/label=AgeI
/note="AgeI"
regulatory 428..618
/regulatory_class="promoter"
/note="PpsbAI_S7942; upstream region of psbA1 up to 25nt
upstream of the start codon in Synechococcus elongatus
PCC7942"
regulatory 625..665
/regulatory_class="ribosome_binding_site"
/note="RBS_LT; RBS and flanking sequences found in Life
Tech pENTR-SD/D Topo, start downstream of the att site and
includes the T7 gene enhancer, RBS, TOPO binding site and
directional TOPO overhang; Life Technologies; synthetic"
RBS 636..656
/note="efficient ribosome binding site from bacteriophage
T7 gene 10 (Olins and Rangwala, 1989)"
CDS 666..1382
/codon_start=1
/product="GFPmut2"
/label=GFPmut2
/note="encodes for green fluorescent proteins"
/protein_id="AII99732.1"
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK
FICTTGKLPVPWPTLVTTFAYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDG
NYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV
NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
misc_feature 1225..1230
/label=MfeI
/note="MfeI"
protein_bind complement(1402..1426)
/gene="mutant version of attB"
/label=attB2
/bound_moiety="BP Clonase(TM)"
/note="recombination site for the Gateway(R) BP reaction"
regulatory 1436..1464
/regulatory_class="terminator"
/note="rrnB T2; rrnB T2; rrnB T2 terminator partial
sequence"
terminator 1436..1463
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
misc_feature 1472..1477
/label=XbaI
/note="XbaI"
misc_feature 1478..1498
/note="G5C5; GC-adaptor for seamless assembly, flanking
functional devices, custom sequences or cyanobacterial
replicons; synthetic"
misc_feature 1496..1501
/label=EcoRV
/note="EcoRV"
rep_origin complement(1687..2360)
/direction=LEFT
/note="colE1_pMA-RQ; origin of replication of colE1 found
inderived from pMA-RQ GeneART vector"
rep_origin complement(1746..2334)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(2505..3365)
/codon_start=1
/product="bla_pMA-RQ"
/label=bla_pMA-RQ
/note="confers ampicillin resistance; beta-lactamase;
derived from pMA-RQ GeneART vector, has one point mutation
compared to pUC19"
/protein_id="AII99733.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(3366..3470)
/gene="bla"
/label=AmpR promoter
regulatory complement(3366..3435)
/regulatory_class="promoter"
/note="Pbla; upstream region of the bla ORF including
promoter and RBS; derived from pUC19"
Taton A, Unglaub F, Wright NE, Zeng WY, Paz-Yepez J, Brahamsha B, Palenik B, Peterson TC, Haerizadeh F, Golden SS, Golden JW.
pCVD034 载体载体图谱
pCVD034 载体载体序列
LOCUS Exported 3493 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Broad host range vector vector pCVD034, complete sequence.
ACCESSION KM017909
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3493)
AUTHORS Taton A, Unglaub F, Wright NE, Zeng WY, Paz-Yepez J, Brahamsha B,
Palenik B, Peterson TC, Haerizadeh F, Golden SS, Golden JW.
TITLE Broad-host-range vector system for synthetic biology and
biotechnology in cyanobacteria
JOURNAL Nucleic Acids Res. (2014) In press
PUBMED 25074377
REFERENCE 2 (bases 1 to 3493)
AUTHORS Taton A, Unglaub F, Wright N, Zeng WY, Paz Yepes J, Brahamsha B,
Palenik B, Peterson T, Haerizadeh F, Golden SS, Golden JW.
TITLE Direct Submission
JOURNAL Submitted (17-JUN-2014) Division of Biological Sciences, University
of California, San Diego, 9500 Gilman Dr., La Jolla, CA 92093, USA
REFERENCE 3 (bases 1 to 3493)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3493
/organism="Broad host range vector vector pCVD034"
/mol_type="other DNA"
/note="PpsbAI-LTRBS-GFPmut2 is a functional device where
GFPmut2 is driven by the PpsbAI promoter isolated from
Synechococcus elongatus PCC7942; RBS and flanking sequences
from the pENTR/SD/D-Topo vector"
/db_xref="taxon:1531892"
primer_bind 293..309
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 320..338
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
misc_feature 389..394
/label=EcoRV
/note="EcoRV"
misc_feature 392..1498
/note="CVD-cassette; device for the GC-adaptor assembly:
expression/reporter cassette, promoter-reporter module,
custom sequence"
misc_feature 392..412
/note="C2G; GC-adaptor for seamless assembly, flanking
antibiotic resistance markers, functional devices or custom
sequences; synthetic"
misc_feature 413..418
/label=AgeI
/note="AgeI"
regulatory 428..618
/regulatory_class="promoter"
/note="PpsbAI_S7942; upstream region of psbA1 up to 25nt
upstream of the start codon in Synechococcus elongatus
PCC7942"
regulatory 625..665
/regulatory_class="ribosome_binding_site"
/note="RBS_LT; RBS and flanking sequences found in Life
Tech pENTR-SD/D Topo, start downstream of the att site and
includes the T7 gene enhancer, RBS, TOPO binding site and
directional TOPO overhang; Life Technologies; synthetic"
RBS 636..656
/note="efficient ribosome binding site from bacteriophage
T7 gene 10 (Olins and Rangwala, 1989)"
CDS 666..1382
/codon_start=1
/product="GFPmut2"
/label=GFPmut2
/note="encodes for green fluorescent proteins"
/protein_id="AII99732.1"
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK
FICTTGKLPVPWPTLVTTFAYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDG
NYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV
NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
misc_feature 1225..1230
/label=MfeI
/note="MfeI"
protein_bind complement(1402..1426)
/gene="mutant version of attB"
/label=attB2
/bound_moiety="BP Clonase(TM)"
/note="recombination site for the Gateway(R) BP reaction"
regulatory 1436..1464
/regulatory_class="terminator"
/note="rrnB T2; rrnB T2; rrnB T2 terminator partial
sequence"
terminator 1436..1463
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
misc_feature 1472..1477
/label=XbaI
/note="XbaI"
misc_feature 1478..1498
/note="G5C5; GC-adaptor for seamless assembly, flanking
functional devices, custom sequences or cyanobacterial
replicons; synthetic"
misc_feature 1496..1501
/label=EcoRV
/note="EcoRV"
rep_origin complement(1687..2360)
/direction=LEFT
/note="colE1_pMA-RQ; origin of replication of colE1 found
inderived from pMA-RQ GeneART vector"
rep_origin complement(1746..2334)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(2505..3365)
/codon_start=1
/product="bla_pMA-RQ"
/label=bla_pMA-RQ
/note="confers ampicillin resistance; beta-lactamase;
derived from pMA-RQ GeneART vector, has one point mutation
compared to pUC19"
/protein_id="AII99733.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(3366..3470)
/gene="bla"
/label=AmpR promoter
regulatory complement(3366..3435)
/regulatory_class="promoter"
/note="Pbla; upstream region of the bla ORF including
promoter and RBS; derived from pUC19"