LOCUS Exported 7331 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pYM70, complete sequence.
ACCESSION GU937092
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7331)
AUTHORS Basso LR Jr., Gast CE, Mao Y, Wong B.
TITLE Fluconazole transport into Candida albicans secretory vesicles by
the membrane proteins Cdr1p, Cdr2p, and Mdr1p
JOURNAL Eukaryotic Cell 9 (6), 960-970 (2010)
PUBMED 20348384
REFERENCE 2 (bases 1 to 7331)
AUTHORS Basso LR Jr., Bartiss A, Mao Y, Gast CE, Coelho PS, Snyder M, Wong
B.
TITLE Transformation of Candida albicans with a synthetic hygromycin B
resistance gene
JOURNAL Yeast 27 (12), 1039-1048 (2010)
PUBMED 20737428
REFERENCE 3 (bases 1 to 7331)
AUTHORS Mao Y, Basso LR Jr., Gast CE, Wong B.
TITLE Direct Submission
JOURNAL Submitted (24-FEB-2010) Medicine, Oregon Health and Science
University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA
REFERENCE 4 (bases 1 to 7331)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..7331
/organism="Expression vector pYM70"
/lab_host="Candida albicans"
/mol_type="other DNA"
/db_xref="taxon:754152"
rep_origin 189..1390
/label=Candida albicans autonomous replication origin 2
/note="Candida albicans autonomous replication origin 2"
primer_bind 1587..1603
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 1637..2652
/regulatory_class="promoter"
/note="Candida albicans ACT1 promoter"
regulatory 2684..3009
/regulatory_class="terminator"
/note="Candida albicans TEF2 terminator"
primer_bind complement(3037..3053)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3061..3077
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3085..3115)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3130..3151
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(3424..4043)
/direction=LEFT
/label=Escherichia coli replication origin pMB1
/note="Escherichia coli replication origin pMB1"
rep_origin complement(3439..4027)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(4198..5058)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=bla
/note="derived from Escherichia coli"
/protein_id="ADF45589.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(4198..5058)
/gene="bla"
/label=bla
promoter complement(5059..5163)
/gene="bla"
/label=AmpR promoter
regulatory 5195..5835
/regulatory_class="promoter"
/note="Candida albicans TEF2 promoter"
CDS 5842..6867
/codon_start=1
/gene="CaHygB"
/product="hygromycin B phosphotransferase"
/label=CaHygB
/note="synthetic; optimized for expression in Candida
albicans"
/protein_id="ADF45590.1"
/translation="MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRG
YVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLP
ETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQ
TVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF
GDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDG
NFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAK
E"
gene 5842..6867
/gene="CaHygB"
/label=CaHygB
regulatory 6874..7261
/regulatory_class="terminator"
/note="Candida albicans ACT1 terminator"
LOCUS Exported 7331 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pYM70, complete sequence.
ACCESSION GU937092
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7331)
AUTHORS Basso LR Jr., Gast CE, Mao Y, Wong B.
TITLE Fluconazole transport into Candida albicans secretory vesicles by
the membrane proteins Cdr1p, Cdr2p, and Mdr1p
JOURNAL Eukaryotic Cell 9 (6), 960-970 (2010)
PUBMED 20348384
REFERENCE 2 (bases 1 to 7331)
AUTHORS Basso LR Jr., Bartiss A, Mao Y, Gast CE, Coelho PS, Snyder M, Wong
B.
TITLE Transformation of Candida albicans with a synthetic hygromycin B
resistance gene
JOURNAL Yeast 27 (12), 1039-1048 (2010)
PUBMED 20737428
REFERENCE 3 (bases 1 to 7331)
AUTHORS Mao Y, Basso LR Jr., Gast CE, Wong B.
TITLE Direct Submission
JOURNAL Submitted (24-FEB-2010) Medicine, Oregon Health and Science
University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA
REFERENCE 4 (bases 1 to 7331)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..7331
/organism="Expression vector pYM70"
/lab_host="Candida albicans"
/mol_type="other DNA"
/db_xref="taxon:754152"
rep_origin 189..1390
/label=Candida albicans autonomous replication origin 2
/note="Candida albicans autonomous replication origin 2"
primer_bind 1587..1603
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 1637..2652
/regulatory_class="promoter"
/note="Candida albicans ACT1 promoter"
regulatory 2684..3009
/regulatory_class="terminator"
/note="Candida albicans TEF2 terminator"
primer_bind complement(3037..3053)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3061..3077
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3085..3115)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3130..3151
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(3424..4043)
/direction=LEFT
/label=Escherichia coli replication origin pMB1
/note="Escherichia coli replication origin pMB1"
rep_origin complement(3439..4027)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(4198..5058)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=bla
/note="derived from Escherichia coli"
/protein_id="ADF45589.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(4198..5058)
/gene="bla"
/label=bla
promoter complement(5059..5163)
/gene="bla"
/label=AmpR promoter
regulatory 5195..5835
/regulatory_class="promoter"
/note="Candida albicans TEF2 promoter"
CDS 5842..6867
/codon_start=1
/gene="CaHygB"
/product="hygromycin B phosphotransferase"
/label=CaHygB
/note="synthetic; optimized for expression in Candida
albicans"
/protein_id="ADF45590.1"
/translation="MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRG
YVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLP
ETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQ
TVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF
GDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDG
NFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAK
E"
gene 5842..6867
/gene="CaHygB"
/label=CaHygB
regulatory 6874..7261
/regulatory_class="terminator"
/note="Candida albicans ACT1 terminator"