LOCUS       Exported                4782 bp ds-DNA     circular SYN 18-DEC-2018
DEFINITION  Cloning vector pXY5, complete sequence.
ACCESSION   KM201426
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 4782)
  AUTHORS   Liu Y-H., Zhang X-X., Rainey PB.
  TITLE     Construction of mini-Tn7 vectors for studying gene expression in 
            Pseudomonas at post-transcriptional levels
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4782)
  AUTHORS   Liu Y-H., Zhang X-X., Rainey PB.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2014) Institute of Natural & Mathematical 
            Sciences, Building 14, Gate 4, Albany Highway, Auckland 0632, New 
            Zealand
REFERENCE   3  (bases 1 to 4782)
  AUTHORS   .
  TITLE     Direct Submission
FEATURES             Location/Qualifiers
     source          1..4782
                     /organism="Cloning vector pXY5"
                     /mol_type="other DNA"
                     /db_xref="taxon:1562264"
     mobile_element  382..580
                     /mobile_element_type="transposon:Tn7R"
                     /note="Tn7R; right end of Tn7"
     primer_bind     585..601
                     /label=KS primer
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     regulatory      629..723
                     /regulatory_class="terminator"
                     /note="bacteriophage lambda T0 terminator"
     terminator      629..723
                     /label=lambda t0 terminator
                     /note="transcription terminator from phage lambda"
     regulatory      820..917
                     /regulatory_class="terminator"
                     /note="Escherichia coli rrnB T1 terminator"
     terminator      826..912
                     /gene="Escherichia coli rrnB"
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     misc_feature    958..1005
                     /note="FRT; Flp recombinase target site"
     protein_bind    958..1005
                     /label=FRT
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="FLP-mediated recombination occurs in the 8-bp core 
                     sequence TCTAGAAA (Turan and Bode, 2011)."
     CDS             complement(1135..1668)
                     /codon_start=1
                     /gene="aacC1"
                     /product="gentamycin acetyl transferase"
                     /label=aacC1
                     /protein_id="AIU47368.1"
                     /translation="MLRSSNDVTQQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAALD
                     LFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAVVGALAAYVLPRFEQPRS
                     EIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIR
                     EEVMHFDIDPSTAT"
     gene            complement(1135..1668)
                     /gene="aacC1"
                     /label=aacC1
     promoter        complement(1857..1885)
                     /gene="intI1 (promoter lies within the coding sequence)"
                     /label=Pc promoter
                     /note="class 1 integron promoter"
     misc_feature    1926..1973
                     /note="FRT; Flp recombinase target site"
     protein_bind    1926..1973
                     /label=FRT
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="FLP-mediated recombination occurs in the 8-bp core 
                     sequence TCTAGAAA (Turan and Bode, 2011)."
     regulatory      2006..2483
                     /regulatory_class="promoter"
                     /note="PdctA"
     misc_feature    2457..2472
                     /label=sigma-54 binding site
                     /note="sigma-54 binding site"
     misc_feature    2484
                     /label=PdctA transcription start site
                     /note="PdctA transcription start site"
     mobile_element  2558..2723
                     /mobile_element_type="transposon:Tn7L"
                     /note="Tn7L; left end of Tn7"
     rep_origin      2957..3313
                     /label=R6K gamma ori
                     /note="gamma replication origin from E. coli plasmid R6K; 
                     requires the R6K initiator protein pi for replication"
     rep_origin      2959..3286
                     /label=R6K origin of replication
                     /note="R6K origin of replication"
     CDS             complement(3722..4582)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=bla
                     /protein_id="AIU47369.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     gene            complement(3722..4582)
                     /gene="bla"
                     /label=bla
     promoter        complement(4583..4687)
                     /gene="bla"
                     /label=AmpR promoter