LOCUS Exported 5632 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Transient expression vector pXUN, complete sequence.
ACCESSION FJ905203
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5632)
AUTHORS Chen S, Songkumarn P, Liu J, Wang GL.
TITLE A versatile zero background T-vector system for gene cloning and
functional genomics
JOURNAL Plant Physiol. 150 (3), 1111-1121 (2009)
PUBMED 19403729
REFERENCE 2 (bases 1 to 5632)
AUTHORS Chen S, Songkumarn P, Liu J, Wang G-L.
TITLE Direct Submission
JOURNAL Submitted (09-APR-2009) Department of Plant Pathology, The Ohio
State University, 201 Kottman Hall, 2021 Coffey Rd, Columbus, OH
43210, USA
REFERENCE 3 (bases 1 to 5632)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5632
/organism="Transient expression vector pXUN"
/mol_type="other DNA"
/db_xref="taxon:643600"
regulatory complement(9..261)
/regulatory_class="terminator"
/note="Nos terminator"
terminator 9..261
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
CDS 622..927
/codon_start=1
/gene="ccdB"
/product="CcdB"
/label=ccdB
/protein_id="ACR08728.1"
/translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK
VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI"
gene 622..927
/gene="ccdB"
/label=ccdB
regulatory complement(995..2985)
/regulatory_class="promoter"
/note="maize ubiquitin-1 promoter"
promoter complement(995..2985)
/label=Ubi promoter
/note="maize polyubiquitin gene promoter"
primer_bind complement(3016..3032)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3040..3056
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3064..3094)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3109..3130
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(3386..4029)
/direction=LEFT
/label=derived from puc19
/note="derived from puc19"
rep_origin complement(3418..4006)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(4177..5037)
/codon_start=1
/product="beta-lactamase"
/label=beta-lactamase
/note="confers resistance to ampicillin"
/protein_id="ACR08729.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(5038..5142)
/gene="bla"
/label=AmpR promoter
primer_bind 5616..5632
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
LOCUS Exported 5632 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Transient expression vector pXUN, complete sequence.
ACCESSION FJ905203
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5632)
AUTHORS Chen S, Songkumarn P, Liu J, Wang GL.
TITLE A versatile zero background T-vector system for gene cloning and
functional genomics
JOURNAL Plant Physiol. 150 (3), 1111-1121 (2009)
PUBMED 19403729
REFERENCE 2 (bases 1 to 5632)
AUTHORS Chen S, Songkumarn P, Liu J, Wang G-L.
TITLE Direct Submission
JOURNAL Submitted (09-APR-2009) Department of Plant Pathology, The Ohio
State University, 201 Kottman Hall, 2021 Coffey Rd, Columbus, OH
43210, USA
REFERENCE 3 (bases 1 to 5632)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5632
/organism="Transient expression vector pXUN"
/mol_type="other DNA"
/db_xref="taxon:643600"
regulatory complement(9..261)
/regulatory_class="terminator"
/note="Nos terminator"
terminator 9..261
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
CDS 622..927
/codon_start=1
/gene="ccdB"
/product="CcdB"
/label=ccdB
/protein_id="ACR08728.1"
/translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK
VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI"
gene 622..927
/gene="ccdB"
/label=ccdB
regulatory complement(995..2985)
/regulatory_class="promoter"
/note="maize ubiquitin-1 promoter"
promoter complement(995..2985)
/label=Ubi promoter
/note="maize polyubiquitin gene promoter"
primer_bind complement(3016..3032)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3040..3056
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3064..3094)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3109..3130
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(3386..4029)
/direction=LEFT
/label=derived from puc19
/note="derived from puc19"
rep_origin complement(3418..4006)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(4177..5037)
/codon_start=1
/product="beta-lactamase"
/label=beta-lactamase
/note="confers resistance to ampicillin"
/protein_id="ACR08729.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(5038..5142)
/gene="bla"
/label=AmpR promoter
primer_bind 5616..5632
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"