LOCUS Exported 8619 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pVWEx1, complete sequence.
ACCESSION MF034723
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 8619)
AUTHORS Bekel T, Stadermann KB, Voss M.
TITLE Nucleotide sequence analysis of the plasmid pVWEx1 by Illumina
sequencing technology
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 8619)
AUTHORS Bekel T, Stadermann KB, Voss M.
TITLE Direct Submission
JOURNAL Submitted (28-APR-2017) Evonik Nutrition & Care GmbH, Kantstrasse 2,
Halle 33790, Germany
REFERENCE 3 (bases 1 to 8619)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..8619
/organism="Cloning vector pVWEx1"
/mol_type="other DNA"
/label=derived from Corynebacterium glutamicum
/note="derived from Corynebacterium glutamicum"
/db_xref="taxon:2005483"
regulatory 1..80
/regulatory_class="promoter"
/note="tacI"
promoter 7..35
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 43..59
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
misc_feature 105..161
/label=MCS
/note="pUC18/19 multiple cloning site"
misc_feature 117..140
/label=multiple cloning site
/note="multiple cloning site"
primer_bind complement(162..178)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
terminator 391..477
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 569..596
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 615..706
/gene="bla"
/label=AmpR promoter
rep_origin 924..3989
/label=derived from Corynebacterium glutamicum pCG1
/note="derived from Corynebacterium glutamicum pCG1"
CDS complement(4572..5387)
/codon_start=1
/gene="neo"
/locus_tag="pVWEx1_neo"
/product="kanamycin kinase"
/label=neo
/note="aminoglycoside 3-phosphotransferase"
/protein_id="ARU80374.1"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
gene complement(4572..5387)
/gene="neo"
/locus_tag="pVWEx1_neo"
/label=neo
rep_origin complement(5715..6544)
/direction=LEFT
/label=derived from Escherichia coli p15A
/note="derived from Escherichia coli p15A"
rep_origin complement(5982..6527)
/direction=LEFT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
CDS complement(7232..8323)
/codon_start=1
/gene="lacI"
/locus_tag="pVWEx1_lacI"
/product="lactose operon repressor"
/label=lacI
/note="LacI"
/protein_id="ARU80375.1"
/translation="MVNVKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAM
AELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVER
SGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSII
FSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGD
WSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTED
SSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTA
SPRALADSLMQLARQVSRLESGQ"
gene complement(7232..8323)
/gene="lacI"
/locus_tag="pVWEx1_lacI"
/label=lacI
CDS complement(7232..8314)
/codon_start=1
/gene="lacI"
/product="lac repressor"
/label=lacI
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
promoter complement(8315..8392)
/gene="lacI (mutant)"
/label=lacIq promoter
/note="In the lacIq allele, a single base change in the
promoter boosts expression of the lacI gene about 10-fold."
LOCUS Exported 8619 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pVWEx1, complete sequence.
ACCESSION MF034723
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 8619)
AUTHORS Bekel T, Stadermann KB, Voss M.
TITLE Nucleotide sequence analysis of the plasmid pVWEx1 by Illumina
sequencing technology
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 8619)
AUTHORS Bekel T, Stadermann KB, Voss M.
TITLE Direct Submission
JOURNAL Submitted (28-APR-2017) Evonik Nutrition & Care GmbH, Kantstrasse 2,
Halle 33790, Germany
REFERENCE 3 (bases 1 to 8619)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC Genomics Workbench v. 9
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..8619
/organism="Cloning vector pVWEx1"
/mol_type="other DNA"
/label=derived from Corynebacterium glutamicum
/note="derived from Corynebacterium glutamicum"
/db_xref="taxon:2005483"
regulatory 1..80
/regulatory_class="promoter"
/note="tacI"
promoter 7..35
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 43..59
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
misc_feature 105..161
/label=MCS
/note="pUC18/19 multiple cloning site"
misc_feature 117..140
/label=multiple cloning site
/note="multiple cloning site"
primer_bind complement(162..178)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
terminator 391..477
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 569..596
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 615..706
/gene="bla"
/label=AmpR promoter
rep_origin 924..3989
/label=derived from Corynebacterium glutamicum pCG1
/note="derived from Corynebacterium glutamicum pCG1"
CDS complement(4572..5387)
/codon_start=1
/gene="neo"
/locus_tag="pVWEx1_neo"
/product="kanamycin kinase"
/label=neo
/note="aminoglycoside 3-phosphotransferase"
/protein_id="ARU80374.1"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
gene complement(4572..5387)
/gene="neo"
/locus_tag="pVWEx1_neo"
/label=neo
rep_origin complement(5715..6544)
/direction=LEFT
/label=derived from Escherichia coli p15A
/note="derived from Escherichia coli p15A"
rep_origin complement(5982..6527)
/direction=LEFT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
CDS complement(7232..8323)
/codon_start=1
/gene="lacI"
/locus_tag="pVWEx1_lacI"
/product="lactose operon repressor"
/label=lacI
/note="LacI"
/protein_id="ARU80375.1"
/translation="MVNVKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAM
AELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVER
SGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSII
FSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGD
WSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTED
SSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTA
SPRALADSLMQLARQVSRLESGQ"
gene complement(7232..8323)
/gene="lacI"
/locus_tag="pVWEx1_lacI"
/label=lacI
CDS complement(7232..8314)
/codon_start=1
/gene="lacI"
/product="lac repressor"
/label=lacI
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
promoter complement(8315..8392)
/gene="lacI (mutant)"
/label=lacIq promoter
/note="In the lacIq allele, a single base change in the
promoter boosts expression of the lacI gene about 10-fold."