Vafadarnejad E, Amoozgar MA, Khansha J, Fallahzade R.
pVAHS01it 载体载体图谱
pVAHS01it 载体载体序列
LOCUS Exported 7530 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pVAHS01it, complete sequence.
ACCESSION KM925070
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7530)
AUTHORS Vafadarnejad E, Amoozgar MA, Khansha J, Fallahzade R.
TITLE The rad2 gene of haloarchaeum Halobacterium salinarum is functional
in the repair of ultraviolet light induced DNA photoproducts
JOURNAL Microbiol. Res. 173, 44-49 (2015)
PUBMED 25801970
REFERENCE 2 (bases 1 to 7530)
AUTHORS Vafadarnejad E, Amoozegar MA, Danaie Fard M, Khansha J.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2014) Department of Microbiology, University of
Tehran, Qods Ave., Tehran, Tehran 14155-6455, Iran
REFERENCE 3 (bases 1 to 7530)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..7530
/organism="Cloning vector pVAHS01it"
/mol_type="other DNA"
/label=designed for Halobacterium salinarum strain R1
/note="designed for Halobacterium salinarum strain R1"
/db_xref="taxon:1618184"
rep_origin 1..1183
primer_bind complement(1112..1128)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 1136..1152
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(1160..1190)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1205..1226
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1514..2102)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(2273..3133)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(3134..3238)
/gene="bla"
/label=AmpR promoter
primer_bind 3710..3726
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS 4078..5997
/codon_start=1
/product="DNA gyrase subunit B"
/label=DNA gyrase subunit B
/protein_id="AJZ76765.1"
/translation="MSQDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVV
DNSIDEALAGHCDAIEVALHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGK
FDNKSYQVSGGLHGVGVTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLE
PGEDTGTTIRFWPDDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLF
EGGIREFVEYLNETKTALHDDVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTRE
GGTHLTGFKTALTRVVNDYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQ
TKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRR
KSALESTSLPGKLADCQSRDPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNV
EKHRLDRILENDEIRALITAIGGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTL
LYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKG
LGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKDHANDAE
WVDI"
regulatory 6439..6550
/regulatory_class="promoter"
/gene="kdp"
gene 6439..6550
/gene="kdp"
/label=kdp
primer_bind complement(6546..6562)
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
regulatory 6557..6777
/regulatory_class="terminator"
Vafadarnejad E, Amoozgar MA, Khansha J, Fallahzade R.
pVAHS01it 载体载体图谱
pVAHS01it 载体载体序列
LOCUS Exported 7530 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pVAHS01it, complete sequence.
ACCESSION KM925070
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7530)
AUTHORS Vafadarnejad E, Amoozgar MA, Khansha J, Fallahzade R.
TITLE The rad2 gene of haloarchaeum Halobacterium salinarum is functional
in the repair of ultraviolet light induced DNA photoproducts
JOURNAL Microbiol. Res. 173, 44-49 (2015)
PUBMED 25801970
REFERENCE 2 (bases 1 to 7530)
AUTHORS Vafadarnejad E, Amoozegar MA, Danaie Fard M, Khansha J.
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2014) Department of Microbiology, University of
Tehran, Qods Ave., Tehran, Tehran 14155-6455, Iran
REFERENCE 3 (bases 1 to 7530)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..7530
/organism="Cloning vector pVAHS01it"
/mol_type="other DNA"
/label=designed for Halobacterium salinarum strain R1
/note="designed for Halobacterium salinarum strain R1"
/db_xref="taxon:1618184"
rep_origin 1..1183
primer_bind complement(1112..1128)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 1136..1152
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(1160..1190)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1205..1226
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1514..2102)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(2273..3133)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(3134..3238)
/gene="bla"
/label=AmpR promoter
primer_bind 3710..3726
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS 4078..5997
/codon_start=1
/product="DNA gyrase subunit B"
/label=DNA gyrase subunit B
/protein_id="AJZ76765.1"
/translation="MSQDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVV
DNSIDEALAGHCDAIEVALHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGK
FDNKSYQVSGGLHGVGVTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLE
PGEDTGTTIRFWPDDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLF
EGGIREFVEYLNETKTALHDDVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTRE
GGTHLTGFKTALTRVVNDYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQ
TKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRR
KSALESTSLPGKLADCQSRDPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNV
EKHRLDRILENDEIRALITAIGGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTL
LYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKG
LGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKDHANDAE
WVDI"
regulatory 6439..6550
/regulatory_class="promoter"
/gene="kdp"
gene 6439..6550
/gene="kdp"
/label=kdp
primer_bind complement(6546..6562)
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
regulatory 6557..6777
/regulatory_class="terminator"