Kozak BU, van Rossum HM, Benjamin KR, Wu L, Daran JM, Pronk JT, van Maris AJ.
pUDE150 载体载体图谱
pUDE150 载体载体序列
LOCUS Exported 9307 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pUDE150, complete sequence.
ACCESSION KF170376
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 9307)
AUTHORS Kozak BU, van Rossum HM, Benjamin KR, Wu L, Daran JM, Pronk JT, van
Maris AJ.
TITLE Replacement of the Saccharomyces cerevisiae acetyl-CoA synthetases
by alternative pathways for cytosolic acetyl-CoA synthesis
JOURNAL Metab. Eng. (2013) In press
PUBMED 24269999
REFERENCE 2 (bases 1 to 9307)
AUTHORS Kozak BU, van Rossum HM, Benjamin KR, Wu L, Daran J-M.G., Pronk JT,
van Maris AJA.
TITLE Direct Submission
JOURNAL Submitted (31-MAY-2013) Biotechnology, Delft University of
Technology, Julianalaan 67, Delft 2628BC, The Netherlands
REFERENCE 3 (bases 1 to 9307)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..9307
/organism="Expression vector pUDE150"
/mol_type="other DNA"
/db_xref="taxon:1431310"
rep_origin 1..941
/label=pMB1 origin
/note="pMB1 origin"
rep_origin complement(183..771)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(942..1802)
/codon_start=1
/gene="ampR"
/product="AmpR"
/label=ampR
/protein_id="AHB33294.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(942..1802)
/gene="ampR"
/label=ampR
promoter complement(1803..1907)
/gene="bla"
/label=AmpR promoter
rep_origin 1934..3279
/label=2-micron origin
/note="2-micron origin"
rep_origin 1934..3276
/label=2u ori
/note="yeast 2u plasmid origin of replication"
protein_bind complement(2897..2944)
/label=FRT
/bound_moiety="FLP recombinase from the Saccharomyces
cerevisiae 2u plasmid"
/note="FLP-mediated recombination occurs in the 8-bp core
sequence TCTAGAAA (Turan and Bode, 2011)."
promoter 3545..3760
/gene="S. cerevisiae URA3"
/label=URA3 promoter
CDS 3761..4564
/codon_start=1
/gene="URA3"
/product="orotidine 5-phosphate decarboxylase"
/label=URA3
/protein_id="AHB33293.1"
/translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELL
ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ
YSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGE
YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDD
VVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN"
gene 3761..4564
/gene="URA3"
/label=URA3
rep_origin complement(4695..5150)
/direction=LEFT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
primer_bind 5295..5311
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 5321..5339
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
terminator 5358..5605
/gene="S. cerevisiae CYC1"
/label=CYC1 terminator
/note="transcription terminator for CYC1"
regulatory complement(5359..5598)
/regulatory_class="terminator"
/note="CYC1 terminator"
primer_bind 5608..5624
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 5657..5681
/gene="mutant version of attB"
/label=attB2
/bound_moiety="BP Clonase(TM)"
/note="recombination site for the Gateway(R) BP reaction"
CDS complement(5697..8306)
/codon_start=1
/gene="adhE"
/product="alcohol-acetaldehyde dehydrogenase"
/label=adhE
/protein_id="AHB33295.1"
/translation="MLTIPEKENRGSKEQEVAIMIDALADKGKKALEALSKKSQEEIDH
IVHQMSLAAVDQHMVLAKLAHEETGRGIYEDKAIKNLYASEYIWNSIKDNKTVGIIGED
KEKGLTYVAEPIGVICGVTPTTNPTSTTIFKAMIAIKTGNPIIFAFHPSAQESSKRAAE
VVLEAAMKAGAPKDIIQWIEVPSIEATKQLMNHKGIALVLATGGSGMVKSAYSTGKPAL
GVGPGNVPSYIEKTAHIKRAVNDIIGSKTFDNGMICASEQVVVIDKEIYKDVTNEFKAH
QAYFVKKDELQRLENAIMNEQKTGIKPDIVGKSAVEIAELAGIPVPENTKLIIAEISGV
GSDYPLSREKLSPVLALVKAQSTKQAFQICEDTLHFGGLGHTAVIHTEDETLQKDFGLR
MKACRVLVNTPSAVGGIGDMYNELIPSLTLGCGSYGRNSISHNVSATDLLNIKTIAKRR
NNTQIFKVPAQIYFEENAIMSLTTMDKIEKVMIVCDPGMVEFGYTKTVENVLRQRTEQP
QIKIFSEVEPNPSTNTVYKGLEMMVDFQPDTIIALGGGSAMDAAKAMWMFFEHPETSFF
GAKQKFLDIGKRTYKIGMPENATFICIPTTSGTGSEVTPFAVITDSETNVKYPLADFAL
TPDVAIIDPQFVMSVPKSVTADTGMDVLTHAMESYVSVMASDYTRGLSLQAIKLTFEYL
KSSVEKGDKVSREKMHNASTLAGMAFANAFLGIAHSIAHKIGGEYGIPHGRANAILLPH
IIRYNAKDPQKHALFPKYEFFRADTDYADIAKFLGLKGNTTEALVESLAKAVYELGQSV
GIEMNLKSQGVSEEELNESIDRMAELAFEDQCTTANPKEALISEIKDIIQTSYDYKQ"
gene complement(5697..8306)
/gene="adhE"
/label=adhE
protein_bind complement(8322..8346)
/gene="mutant version of attB"
/label=attB1
/bound_moiety="BP Clonase(TM)"
/note="recombination site for the Gateway(R) BP reaction"
primer_bind complement(8354..8370)
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
regulatory complement(8364..9036)
/regulatory_class="promoter"
/note="TDH3 promoter"
promoter complement(8376..9020)
/gene="S. cerevisiae TDH3"
/label=GAP promoter
/note="promoter for glyceraldehyde-3-phosphate
dehydrogenase"
promoter complement(9049..9067)
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
primer_bind complement(9088..9104)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 9112..9128
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(9136..9166)
/label=lac promoter
/note="promoter for the E. coli lac operon"
Kozak BU, van Rossum HM, Benjamin KR, Wu L, Daran JM, Pronk JT, van Maris AJ.
pUDE150 载体载体图谱
pUDE150 载体载体序列
LOCUS Exported 9307 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pUDE150, complete sequence.
ACCESSION KF170376
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 9307)
AUTHORS Kozak BU, van Rossum HM, Benjamin KR, Wu L, Daran JM, Pronk JT, van
Maris AJ.
TITLE Replacement of the Saccharomyces cerevisiae acetyl-CoA synthetases
by alternative pathways for cytosolic acetyl-CoA synthesis
JOURNAL Metab. Eng. (2013) In press
PUBMED 24269999
REFERENCE 2 (bases 1 to 9307)
AUTHORS Kozak BU, van Rossum HM, Benjamin KR, Wu L, Daran J-M.G., Pronk JT,
van Maris AJA.
TITLE Direct Submission
JOURNAL Submitted (31-MAY-2013) Biotechnology, Delft University of
Technology, Julianalaan 67, Delft 2628BC, The Netherlands
REFERENCE 3 (bases 1 to 9307)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..9307
/organism="Expression vector pUDE150"
/mol_type="other DNA"
/db_xref="taxon:1431310"
rep_origin 1..941
/label=pMB1 origin
/note="pMB1 origin"
rep_origin complement(183..771)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(942..1802)
/codon_start=1
/gene="ampR"
/product="AmpR"
/label=ampR
/protein_id="AHB33294.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(942..1802)
/gene="ampR"
/label=ampR
promoter complement(1803..1907)
/gene="bla"
/label=AmpR promoter
rep_origin 1934..3279
/label=2-micron origin
/note="2-micron origin"
rep_origin 1934..3276
/label=2u ori
/note="yeast 2u plasmid origin of replication"
protein_bind complement(2897..2944)
/label=FRT
/bound_moiety="FLP recombinase from the Saccharomyces
cerevisiae 2u plasmid"
/note="FLP-mediated recombination occurs in the 8-bp core
sequence TCTAGAAA (Turan and Bode, 2011)."
promoter 3545..3760
/gene="S. cerevisiae URA3"
/label=URA3 promoter
CDS 3761..4564
/codon_start=1
/gene="URA3"
/product="orotidine 5-phosphate decarboxylase"
/label=URA3
/protein_id="AHB33293.1"
/translation="MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELL
ELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ
YSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGE
YTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDD
VVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN"
gene 3761..4564
/gene="URA3"
/label=URA3
rep_origin complement(4695..5150)
/direction=LEFT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
primer_bind 5295..5311
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 5321..5339
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
terminator 5358..5605
/gene="S. cerevisiae CYC1"
/label=CYC1 terminator
/note="transcription terminator for CYC1"
regulatory complement(5359..5598)
/regulatory_class="terminator"
/note="CYC1 terminator"
primer_bind 5608..5624
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 5657..5681
/gene="mutant version of attB"
/label=attB2
/bound_moiety="BP Clonase(TM)"
/note="recombination site for the Gateway(R) BP reaction"
CDS complement(5697..8306)
/codon_start=1
/gene="adhE"
/product="alcohol-acetaldehyde dehydrogenase"
/label=adhE
/protein_id="AHB33295.1"
/translation="MLTIPEKENRGSKEQEVAIMIDALADKGKKALEALSKKSQEEIDH
IVHQMSLAAVDQHMVLAKLAHEETGRGIYEDKAIKNLYASEYIWNSIKDNKTVGIIGED
KEKGLTYVAEPIGVICGVTPTTNPTSTTIFKAMIAIKTGNPIIFAFHPSAQESSKRAAE
VVLEAAMKAGAPKDIIQWIEVPSIEATKQLMNHKGIALVLATGGSGMVKSAYSTGKPAL
GVGPGNVPSYIEKTAHIKRAVNDIIGSKTFDNGMICASEQVVVIDKEIYKDVTNEFKAH
QAYFVKKDELQRLENAIMNEQKTGIKPDIVGKSAVEIAELAGIPVPENTKLIIAEISGV
GSDYPLSREKLSPVLALVKAQSTKQAFQICEDTLHFGGLGHTAVIHTEDETLQKDFGLR
MKACRVLVNTPSAVGGIGDMYNELIPSLTLGCGSYGRNSISHNVSATDLLNIKTIAKRR
NNTQIFKVPAQIYFEENAIMSLTTMDKIEKVMIVCDPGMVEFGYTKTVENVLRQRTEQP
QIKIFSEVEPNPSTNTVYKGLEMMVDFQPDTIIALGGGSAMDAAKAMWMFFEHPETSFF
GAKQKFLDIGKRTYKIGMPENATFICIPTTSGTGSEVTPFAVITDSETNVKYPLADFAL
TPDVAIIDPQFVMSVPKSVTADTGMDVLTHAMESYVSVMASDYTRGLSLQAIKLTFEYL
KSSVEKGDKVSREKMHNASTLAGMAFANAFLGIAHSIAHKIGGEYGIPHGRANAILLPH
IIRYNAKDPQKHALFPKYEFFRADTDYADIAKFLGLKGNTTEALVESLAKAVYELGQSV
GIEMNLKSQGVSEEELNESIDRMAELAFEDQCTTANPKEALISEIKDIIQTSYDYKQ"
gene complement(5697..8306)
/gene="adhE"
/label=adhE
protein_bind complement(8322..8346)
/gene="mutant version of attB"
/label=attB1
/bound_moiety="BP Clonase(TM)"
/note="recombination site for the Gateway(R) BP reaction"
primer_bind complement(8354..8370)
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
regulatory complement(8364..9036)
/regulatory_class="promoter"
/note="TDH3 promoter"
promoter complement(8376..9020)
/gene="S. cerevisiae TDH3"
/label=GAP promoter
/note="promoter for glyceraldehyde-3-phosphate
dehydrogenase"
promoter complement(9049..9067)
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
primer_bind complement(9088..9104)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 9112..9128
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(9136..9166)
/label=lac promoter
/note="promoter for the E. coli lac operon"