LOCUS Exported 4972 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pUCP30T-mKeima, complete sequence.
ACCESSION KT878741
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4972)
AUTHORS Barbier M, Damron FH.
TITLE Rainbow Vectors for Broad-Range Bacterial Fluorescence Labeling
JOURNAL PLoS ONE 11 (3), E0146827 (2016)
PUBMED 26937640
REFERENCE 2 (bases 1 to 4972)
AUTHORS Barbier M, Damron FH.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2015) Microbiology, Immunology and Cell Biology,
West Virginia University, School of Medicine, One Medical Center
Drive, Morgantown, WV 26506, USA
REFERENCE 3 (bases 1 to 4972)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4972
/organism="Cloning vector pUCP30T-mKeima"
/mol_type="other DNA"
/db_xref="taxon:1811361"
rep_origin 72..660
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
oriT 732..840
/note="incP origin of transfer"
protein_bind 1224..1245
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 1260..1290
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1298..1314
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 1322..1338
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 1369..2037
/codon_start=1
/gene="mkeima"
/product="mKeima"
/label=mkeima
/protein_id="AMO27260.1"
/translation="MVSVIAKQMTYKVYMSGTVNGHYFEVEGDGKGKPYEGEQTVKLTV
TKGGPLPFAWDILSPQLQYGSIPFTKYPEDIPDYFKQSFPEGYTWERSMNFEDGAVCTV
SNDSSIQGNCFIYNVKISGENFPPNGPVMQKKTQGWEPSTERLFARDGMLIGNDYMALK
LEGGGHYLCEFKSTYKAKKPVRMPGRHEIDRKLDVTSHNRDYTSVEQCEIAIARHSLLG
"
gene 1369..2037
/gene="mkeima"
/label=mkeima
primer_bind complement(2077..2093)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS complement(2254..3087)
/codon_start=1
/gene="rep"
/product="Rep"
/label=rep
/protein_id="AMO27258.1"
/translation="MASPPMVYKSNALVEAAYRLSVQEQRIVLACISQVKRSEPVTDEV
MYSVTAEDIATMAGVPIESSYNQLKEAALRLKRREVRLTQEPNGKGKRPSVMITGWVQT
IIYREGEGRVELRFTKDMLPYLTELTKQFTKYALADVAKMDSTHAIRLYELLMQWDSIG
QREIEIDQLRKWFQLEGRYPSIKDFKLRVLDPAVTQINEHSPLQVEWAQRKTGRKVTHL
LFSFGPKKPAKAVGKAPAKRKAGKISDAEIAKQARPGETWEAARARLTQMPLDLA"
gene complement(2254..3087)
/gene="rep"
/label=rep
rep_origin 3101..3452
/label=pRO1600 oriV
/note="broad-host-range origin of replication from
Pseudomonas aeruginosa plasmid pRO1600; requires the
pRO1600 Rep protein for replication (West et al., 1994)"
promoter 3493..3521
/gene="intI1 (promoter lies within the coding sequence)"
/label=Pc promoter
/note="class 1 integron promoter"
CDS 3710..4243
/codon_start=1
/gene="accC1"
/product="AccC1"
/label=accC1
/protein_id="AMO27259.1"
/translation="MLRSSNDVTQQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAALD
LFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAVVGALAAYVLPRFEQPRS
EIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIR
EEVMHFDIDPSTAT"
gene 3710..4243
/gene="accC1"
/label=accC1
LOCUS Exported 4972 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pUCP30T-mKeima, complete sequence.
ACCESSION KT878741
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4972)
AUTHORS Barbier M, Damron FH.
TITLE Rainbow Vectors for Broad-Range Bacterial Fluorescence Labeling
JOURNAL PLoS ONE 11 (3), E0146827 (2016)
PUBMED 26937640
REFERENCE 2 (bases 1 to 4972)
AUTHORS Barbier M, Damron FH.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2015) Microbiology, Immunology and Cell Biology,
West Virginia University, School of Medicine, One Medical Center
Drive, Morgantown, WV 26506, USA
REFERENCE 3 (bases 1 to 4972)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4972
/organism="Cloning vector pUCP30T-mKeima"
/mol_type="other DNA"
/db_xref="taxon:1811361"
rep_origin 72..660
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
oriT 732..840
/note="incP origin of transfer"
protein_bind 1224..1245
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 1260..1290
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1298..1314
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 1322..1338
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 1369..2037
/codon_start=1
/gene="mkeima"
/product="mKeima"
/label=mkeima
/protein_id="AMO27260.1"
/translation="MVSVIAKQMTYKVYMSGTVNGHYFEVEGDGKGKPYEGEQTVKLTV
TKGGPLPFAWDILSPQLQYGSIPFTKYPEDIPDYFKQSFPEGYTWERSMNFEDGAVCTV
SNDSSIQGNCFIYNVKISGENFPPNGPVMQKKTQGWEPSTERLFARDGMLIGNDYMALK
LEGGGHYLCEFKSTYKAKKPVRMPGRHEIDRKLDVTSHNRDYTSVEQCEIAIARHSLLG
"
gene 1369..2037
/gene="mkeima"
/label=mkeima
primer_bind complement(2077..2093)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS complement(2254..3087)
/codon_start=1
/gene="rep"
/product="Rep"
/label=rep
/protein_id="AMO27258.1"
/translation="MASPPMVYKSNALVEAAYRLSVQEQRIVLACISQVKRSEPVTDEV
MYSVTAEDIATMAGVPIESSYNQLKEAALRLKRREVRLTQEPNGKGKRPSVMITGWVQT
IIYREGEGRVELRFTKDMLPYLTELTKQFTKYALADVAKMDSTHAIRLYELLMQWDSIG
QREIEIDQLRKWFQLEGRYPSIKDFKLRVLDPAVTQINEHSPLQVEWAQRKTGRKVTHL
LFSFGPKKPAKAVGKAPAKRKAGKISDAEIAKQARPGETWEAARARLTQMPLDLA"
gene complement(2254..3087)
/gene="rep"
/label=rep
rep_origin 3101..3452
/label=pRO1600 oriV
/note="broad-host-range origin of replication from
Pseudomonas aeruginosa plasmid pRO1600; requires the
pRO1600 Rep protein for replication (West et al., 1994)"
promoter 3493..3521
/gene="intI1 (promoter lies within the coding sequence)"
/label=Pc promoter
/note="class 1 integron promoter"
CDS 3710..4243
/codon_start=1
/gene="accC1"
/product="AccC1"
/label=accC1
/protein_id="AMO27259.1"
/translation="MLRSSNDVTQQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAALD
LFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAVVGALAAYVLPRFEQPRS
EIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIR
EEVMHFDIDPSTAT"
gene 3710..4243
/gene="accC1"
/label=accC1