LOCUS Exported 5793 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cosmid vector pTL5, complete sequence.
ACCESSION U07340
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5793)
AUTHORS Slightom JL, Siemieniak DR, Koop BF, Hood L.
TITLE The complete nucleotide sequence of cosmid vector pTL5: location and
origin of its genetic components
JOURNAL Gene 147 (1), 77-79 (1994)
PUBMED 8088551
REFERENCE 2 (bases 1 to 5793)
AUTHORS Sutcliffe JG.
TITLE Complete nucleotide sequence of the Escherichia coli plasmid pBR322
JOURNAL Cold Spring Harb. Symp. Quant. Biol. 43 (PT 1), 77-90 (1979)
PUBMED 383387
REFERENCE 3 (bases 1 to 5793)
AUTHORS Daniels DL, Schroeder JL, Szybalski W, Sanger F, Blattner FR.
TITLE Appendix I: A Molecular Map of Coliphage Lambda
JOURNAL (in) Hendrix,R.W. (Ed.); LAMBDA II: 519-676; Cold Spring Harbor
Laboratory, Cold Spring Harbor, NY (1983)
REFERENCE 4 (bases 1 to 5793)
AUTHORS Lund T, Grosveld FG, Flavell RA.
TITLE Isolation of transforming DNA by cosmid rescue
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79 (2), 520-524 (1982)
PUBMED 6210908
REFERENCE 5 (bases 1 to 5793)
AUTHORS Slightom JL.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-1994) Jerry L. Slightom, Molecular Biology, The
Upjohn Company, 301 Henrietta Street, Kalamazoo, MI 49007, USA
REFERENCE 6 (bases 1 to 5793)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5793
/organism="Cloning vector pTL5"
/lab_host="Escherichia coli"
/mol_type="genomic DNA"
/db_xref="taxon:33781"
promoter 10..38
/label=tet promoter
/note="E. coli promoter for tetracycline efflux protein
gene"
CDS 86..1276
/codon_start=1
/gene="tet"
/product="tetracycline efflux protein"
/label=TcR
/note="confers resistance to tetracycline"
/translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHY
GVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRI
VAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPF
LAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIM
QLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAII
AGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSL
AALTSLTSIIGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST"
misc_feature 1461..2113
/note="DNA region from bacteriophage lambda, known as the
lambda cro-cII region. Shares 100% identity with lambda
sequence, GenBank Accession Number J02459"
terminator 1537..1631
/label=lambda t0 terminator
/note="transcription terminator from phage lambda"
misc_feature 2114..3448
/note="Sequence region obtained from bacteriophage Charon
4A, but originally from bacteriophage phi 80. phi 80 right
arm region"
misc_feature 3437..3448
/label=bacteriophage Charon 4A cohesive ends
/note="bacteriophage Charon 4A cohesive ends"
misc_feature 3449..3854
/note="DNA region from Charon 4A, originally from
bacteriophage lambda, left arm region"
misc_feature 3573
/note="left arm of bacteriophage lambda (GenBank Accession
Number J02459) differs after this position as it contains
one additional G nucleotide not found in pTL5"
rep_origin 3855..5793
/note="DNA region from pBR322, contains the ColE1 ori.
Sequence shares 100% identity with GenBank Accession Number
J01749 (pBR322)"
CDS 4102..4293
/codon_start=1
/gene="rop"
/product="Rop protein, which maintains plasmids at low copy
number"
/label=rop
/translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
DELYRSCLARFGDDGENL"
misc_feature 4395..4535
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(4721..5308)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
LOCUS Exported 5793 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cosmid vector pTL5, complete sequence.
ACCESSION U07340
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5793)
AUTHORS Slightom JL, Siemieniak DR, Koop BF, Hood L.
TITLE The complete nucleotide sequence of cosmid vector pTL5: location and
origin of its genetic components
JOURNAL Gene 147 (1), 77-79 (1994)
PUBMED 8088551
REFERENCE 2 (bases 1 to 5793)
AUTHORS Sutcliffe JG.
TITLE Complete nucleotide sequence of the Escherichia coli plasmid pBR322
JOURNAL Cold Spring Harb. Symp. Quant. Biol. 43 (PT 1), 77-90 (1979)
PUBMED 383387
REFERENCE 3 (bases 1 to 5793)
AUTHORS Daniels DL, Schroeder JL, Szybalski W, Sanger F, Blattner FR.
TITLE Appendix I: A Molecular Map of Coliphage Lambda
JOURNAL (in) Hendrix,R.W. (Ed.); LAMBDA II: 519-676; Cold Spring Harbor
Laboratory, Cold Spring Harbor, NY (1983)
REFERENCE 4 (bases 1 to 5793)
AUTHORS Lund T, Grosveld FG, Flavell RA.
TITLE Isolation of transforming DNA by cosmid rescue
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79 (2), 520-524 (1982)
PUBMED 6210908
REFERENCE 5 (bases 1 to 5793)
AUTHORS Slightom JL.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-1994) Jerry L. Slightom, Molecular Biology, The
Upjohn Company, 301 Henrietta Street, Kalamazoo, MI 49007, USA
REFERENCE 6 (bases 1 to 5793)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5793
/organism="Cloning vector pTL5"
/lab_host="Escherichia coli"
/mol_type="genomic DNA"
/db_xref="taxon:33781"
promoter 10..38
/label=tet promoter
/note="E. coli promoter for tetracycline efflux protein
gene"
CDS 86..1276
/codon_start=1
/gene="tet"
/product="tetracycline efflux protein"
/label=TcR
/note="confers resistance to tetracycline"
/translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHY
GVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRI
VAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPF
LAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIM
QLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAII
AGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSL
AALTSLTSIIGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST"
misc_feature 1461..2113
/note="DNA region from bacteriophage lambda, known as the
lambda cro-cII region. Shares 100% identity with lambda
sequence, GenBank Accession Number J02459"
terminator 1537..1631
/label=lambda t0 terminator
/note="transcription terminator from phage lambda"
misc_feature 2114..3448
/note="Sequence region obtained from bacteriophage Charon
4A, but originally from bacteriophage phi 80. phi 80 right
arm region"
misc_feature 3437..3448
/label=bacteriophage Charon 4A cohesive ends
/note="bacteriophage Charon 4A cohesive ends"
misc_feature 3449..3854
/note="DNA region from Charon 4A, originally from
bacteriophage lambda, left arm region"
misc_feature 3573
/note="left arm of bacteriophage lambda (GenBank Accession
Number J02459) differs after this position as it contains
one additional G nucleotide not found in pTL5"
rep_origin 3855..5793
/note="DNA region from pBR322, contains the ColE1 ori.
Sequence shares 100% identity with GenBank Accession Number
J01749 (pBR322)"
CDS 4102..4293
/codon_start=1
/gene="rop"
/product="Rop protein, which maintains plasmids at low copy
number"
/label=rop
/translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
DELYRSCLARFGDDGENL"
misc_feature 4395..4535
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(4721..5308)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"