LOCUS Exported 3268 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pTHSSe_58, complete sequence.
ACCESSION MH029775
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3268)
AUTHORS Segall-Shapiro TH, Sontag ED, Voigt CA.
TITLE Engineered promoters enable constant gene expression at any copy
number in bacteria
JOURNAL Nat. Biotechnol. (2018) In press
PUBMED 29553576
REFERENCE 2 (bases 1 to 3268)
AUTHORS Segall-Shapiro TH, Sontag ED, Voigt CA.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2018) Synthetic Biology Center, Department of
Biological Engineering, Massachusetts Institute of Technology, 77
Massachusetts Avenue, Cambridge, MA 02139, USA
REFERENCE 3 (bases 1 to 3268)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3268
/organism="Cloning vector pTHSSe_58"
/mol_type="other DNA"
/label=insulated constitutive promoter driving GFP
/note="insulated constitutive promoter driving GFP"
/db_xref="taxon:2137939"
regulatory complement(13..102)
/regulatory_class="terminator"
/note="ECK120029600"
regulatory 107..175
/regulatory_class="promoter"
/note="PT7A1w1"
ncRNA 176..250
/product="RiboJ"
/label=ribozyme
/note="insulator"
/ncRNA_class="ribozyme"
misc_RNA 178..227
/label=sTRSV HHRz
/note="hammerhead ribozyme from the tobacco ringspot virus
satellite RNA (Khvorova et al., 2003)"
regulatory 251..269
/regulatory_class="ribosome_binding_site"
/note="B0032; derived from BBa_B0032"
CDS 270..986
/codon_start=1
/product="sfGFP"
/label=sfGFP
/protein_id="AVR55164.1"
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLK
FICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDG
TYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIKA
NFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSVLSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
CDS 270..983
/codon_start=1
/product="GFP variant that folds robustly even when fused
to poorly folded proteins (Pedelacq et al., 2006)"
/label=superfolder GFP
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLK
FICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDG
TYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIKA
NFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSVLSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
regulatory 995..1123
/regulatory_class="terminator"
/note="B0015; BBa_B0015"
terminator 1003..1074
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 1090..1117
/label=T7Te terminator
/note="phage T7 early transcription terminator"
misc_feature 1136..1156
/label=BioBrick suffix
/note="universal suffix for all parts"
terminator 1157..1214
/label=his operon terminator
/note="This putative transcriptin terminator from the E.
coli his operon has a 2-bp deletion introduced during
synthesis. Its efficiency has not been determined."
rep_origin 1310..2135
/label=p15A origin
/note="p15A origin"
rep_origin 1327..1872
/direction=RIGHT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
terminator 2243..2337
/label=lambda t0 terminator
/note="transcription terminator from phage lambda"
misc_feature complement(2358..3017)
/label=similar to chloramphenicol resistance protein
/note="similar to chloramphenicol resistance protein"
CDS complement(2358..3017)
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=CmR
/note="confers resistance to chloramphenicol"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
terminator 3201..3244
/label=bacterial terminator
/note="putative bacterial transcription terminator"
misc_feature 3247..3268
/label=BioBrick prefix
/note="BioBrick prefix for parts that do not start with
""ATG"""
LOCUS Exported 3268 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pTHSSe_58, complete sequence.
ACCESSION MH029775
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3268)
AUTHORS Segall-Shapiro TH, Sontag ED, Voigt CA.
TITLE Engineered promoters enable constant gene expression at any copy
number in bacteria
JOURNAL Nat. Biotechnol. (2018) In press
PUBMED 29553576
REFERENCE 2 (bases 1 to 3268)
AUTHORS Segall-Shapiro TH, Sontag ED, Voigt CA.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2018) Synthetic Biology Center, Department of
Biological Engineering, Massachusetts Institute of Technology, 77
Massachusetts Avenue, Cambridge, MA 02139, USA
REFERENCE 3 (bases 1 to 3268)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3268
/organism="Cloning vector pTHSSe_58"
/mol_type="other DNA"
/label=insulated constitutive promoter driving GFP
/note="insulated constitutive promoter driving GFP"
/db_xref="taxon:2137939"
regulatory complement(13..102)
/regulatory_class="terminator"
/note="ECK120029600"
regulatory 107..175
/regulatory_class="promoter"
/note="PT7A1w1"
ncRNA 176..250
/product="RiboJ"
/label=ribozyme
/note="insulator"
/ncRNA_class="ribozyme"
misc_RNA 178..227
/label=sTRSV HHRz
/note="hammerhead ribozyme from the tobacco ringspot virus
satellite RNA (Khvorova et al., 2003)"
regulatory 251..269
/regulatory_class="ribosome_binding_site"
/note="B0032; derived from BBa_B0032"
CDS 270..986
/codon_start=1
/product="sfGFP"
/label=sfGFP
/protein_id="AVR55164.1"
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLK
FICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDG
TYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIKA
NFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSVLSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
CDS 270..983
/codon_start=1
/product="GFP variant that folds robustly even when fused
to poorly folded proteins (Pedelacq et al., 2006)"
/label=superfolder GFP
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLK
FICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDG
TYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIKA
NFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSVLSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
regulatory 995..1123
/regulatory_class="terminator"
/note="B0015; BBa_B0015"
terminator 1003..1074
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 1090..1117
/label=T7Te terminator
/note="phage T7 early transcription terminator"
misc_feature 1136..1156
/label=BioBrick suffix
/note="universal suffix for all parts"
terminator 1157..1214
/label=his operon terminator
/note="This putative transcriptin terminator from the E.
coli his operon has a 2-bp deletion introduced during
synthesis. Its efficiency has not been determined."
rep_origin 1310..2135
/label=p15A origin
/note="p15A origin"
rep_origin 1327..1872
/direction=RIGHT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
terminator 2243..2337
/label=lambda t0 terminator
/note="transcription terminator from phage lambda"
misc_feature complement(2358..3017)
/label=similar to chloramphenicol resistance protein
/note="similar to chloramphenicol resistance protein"
CDS complement(2358..3017)
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=CmR
/note="confers resistance to chloramphenicol"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
terminator 3201..3244
/label=bacterial terminator
/note="putative bacterial transcription terminator"
misc_feature 3247..3268
/label=BioBrick prefix
/note="BioBrick prefix for parts that do not start with
""ATG"""