LOCUS Exported 5422 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pTac-At4CL3, complete sequence.
ACCESSION MH488934
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5422)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 5422)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 5422)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5422
/organism="Cloning vector pTac-At4CL3"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301155"
CDS 8..1693
/codon_start=1
/gene="4CL3"
/product="4-coumarate:CoA ligase 3"
/label=4CL3
/note="derived from Arabidopsis thaliana"
/protein_id="AXN70029.1"
/translation="MITAALHEPQIHKPTDTSVVSDDVLPHSPPTPRIFRSKLPDIDIP
NHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIM
ILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKN
LGENLTLITTDEPTPENCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKG
VVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLL
MHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKEL
QDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLE
TRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVD
RLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITE
EDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKLC"
gene 8..1693
/gene="4CL3"
/label=4CL3
regulatory 1737..2054
/regulatory_class="terminator"
/note="rrnBT1T2"
terminator 1942..2028
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 2120..2147
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 2167..2258
/gene="bla"
/label=AmpR promoter
primer_bind complement(2571..2587)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS 2830..3645
/codon_start=1
/product="kanamycin resistance protein"
/label=kanamycin resistance protein
/protein_id="AXN70028.1"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
rep_origin 4174..4719
/direction=RIGHT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
rep_origin 4227..4677
/label=p15A
/note="p15A"
regulatory 5356..5384
/regulatory_class="promoter"
/note="Tac promoter"
promoter 5356..5384
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 5392..5408
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
LOCUS Exported 5422 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pTac-At4CL3, complete sequence.
ACCESSION MH488934
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5422)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 5422)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 5422)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5422
/organism="Cloning vector pTac-At4CL3"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301155"
CDS 8..1693
/codon_start=1
/gene="4CL3"
/product="4-coumarate:CoA ligase 3"
/label=4CL3
/note="derived from Arabidopsis thaliana"
/protein_id="AXN70029.1"
/translation="MITAALHEPQIHKPTDTSVVSDDVLPHSPPTPRIFRSKLPDIDIP
NHLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIM
ILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKN
LGENLTLITTDEPTPENCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSGTTGLPKG
VVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIYSLNSVLLNSLRSGATVLL
MHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKEL
QDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLE
TRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVD
RLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAFVVRSNGNDITE
EDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLKAKLC"
gene 8..1693
/gene="4CL3"
/label=4CL3
regulatory 1737..2054
/regulatory_class="terminator"
/note="rrnBT1T2"
terminator 1942..2028
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 2120..2147
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 2167..2258
/gene="bla"
/label=AmpR promoter
primer_bind complement(2571..2587)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS 2830..3645
/codon_start=1
/product="kanamycin resistance protein"
/label=kanamycin resistance protein
/protein_id="AXN70028.1"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
rep_origin 4174..4719
/direction=RIGHT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
rep_origin 4227..4677
/label=p15A
/note="p15A"
regulatory 5356..5384
/regulatory_class="promoter"
/note="Tac promoter"
promoter 5356..5384
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 5392..5408
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."