LOCUS Exported 6610 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pTac-At4CL1m-fus-VvSTS, complete sequence.
ACCESSION MH488944
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 6610)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 6610)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 6610)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..6610
/organism="Cloning vector pTac-At4CL1m-fus-VvSTS"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301153"
misc_feature 8..1690
/gene="4CL1m"
/note="similar to 4-coumarate:CoA ligase 1 (4AT mutant);
derived from Arabidopsis thaliana; I250L/N404K/I461V"
gene 8..1690
/gene="4CL1m"
/label=4CL1m
misc_feature 1691..1702
/label=similar to glycine-serine linker
/note="similar to glycine-serine linker"
CDS 1703..2881
/codon_start=1
/gene="STS"
/product="stilbene synthase"
/label=STS
/note="Vitis vinifera"
/protein_id="AXN70053.1"
/translation="MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADFYFRVTK
SEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPK
LGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQG
CYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAV
IVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEK
CLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSA
CVLFILDEMRKKSLKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIPMVTN"
gene 1703..2881
/gene="STS"
/label=STS
regulatory 2925..3242
/regulatory_class="terminator"
/note="rrnBT1T2"
terminator 3130..3216
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 3308..3335
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 3355..3446
/gene="bla"
/label=AmpR promoter
primer_bind complement(3759..3775)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS 4018..4833
/codon_start=1
/product="kanamycin resistance protein"
/label=kanamycin resistance protein
/protein_id="AXN70054.1"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
rep_origin 5362..5907
/direction=RIGHT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
rep_origin 5415..5865
/label=p15A
/note="p15A"
promoter 6544..6572
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 6580..6596
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
LOCUS Exported 6610 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pTac-At4CL1m-fus-VvSTS, complete sequence.
ACCESSION MH488944
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 6610)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 6610)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 6610)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..6610
/organism="Cloning vector pTac-At4CL1m-fus-VvSTS"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301153"
misc_feature 8..1690
/gene="4CL1m"
/note="similar to 4-coumarate:CoA ligase 1 (4AT mutant);
derived from Arabidopsis thaliana; I250L/N404K/I461V"
gene 8..1690
/gene="4CL1m"
/label=4CL1m
misc_feature 1691..1702
/label=similar to glycine-serine linker
/note="similar to glycine-serine linker"
CDS 1703..2881
/codon_start=1
/gene="STS"
/product="stilbene synthase"
/label=STS
/note="Vitis vinifera"
/protein_id="AXN70053.1"
/translation="MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADFYFRVTK
SEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPK
LGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQG
CYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAV
IVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEK
CLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSA
CVLFILDEMRKKSLKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIPMVTN"
gene 1703..2881
/gene="STS"
/label=STS
regulatory 2925..3242
/regulatory_class="terminator"
/note="rrnBT1T2"
terminator 3130..3216
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 3308..3335
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 3355..3446
/gene="bla"
/label=AmpR promoter
primer_bind complement(3759..3775)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
CDS 4018..4833
/codon_start=1
/product="kanamycin resistance protein"
/label=kanamycin resistance protein
/protein_id="AXN70054.1"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
rep_origin 5362..5907
/direction=RIGHT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
rep_origin 5415..5865
/label=p15A
/note="p15A"
promoter 6544..6572
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 6580..6596
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."