LOCUS       Exported                5449 bp ds-DNA     circular SYN 18-DEC-2018
DEFINITION  Episomal vector pSpiro-BSR-Sec61alpha-2xOLLAS-C, complete sequence.
ACCESSION   JQ768108
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 5449)
  AUTHORS   Jerlstrom-Hultqvist J, Einarsson E, Svard SG.
  TITLE     Stable Transfection of the Diplomonad Parasite Spironucleus 
            salmonicida
  JOURNAL   Eukaryotic Cell 11 (11), 1353-1361 (2012)
  PUBMED    22983987
REFERENCE   2  (bases 1 to 5449)
  AUTHORS   Jerlstroem-Hultqvist JSE., Einarsson EM, Svaerd SG.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2012) Department of Cell and Molecular Biology, 
            Uppsala University, BMC, Box 596, Uppsala 751 24, Sweden
REFERENCE   3  (bases 1 to 5449)
  AUTHORS   .
  TITLE     Direct Submission
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing 
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..5449
                     /organism="Episomal vector
                     pSpiro-BSR-Sec61alpha-2xOLLAS-C"
                     /mol_type="other DNA"
                     /db_xref="taxon:1233388"
     promoter        24..128
                     /gene="bla"
                     /label=AmpR promoter
     CDS             129..989
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     CDS             327..989
                     /codon_start=1
                     /transl_except="(pos: 987 .. 989,  aa: TERM)"
                     /product="beta-lactamase"
                     /label=beta-lactamase
                     /protein_id="AFS33214.1"
                     /translation="MSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHL
                     TDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEA
                     IPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFI
                     ADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW"
     rep_origin      1160..1748
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     protein_bind    2036..2057
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        2072..2102
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    2110..2126
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     2134..2150
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     promoter        2171..2189
                     /label=T3 promoter
                     /note="promoter for bacteriophage T3 RNA polymerase"
     3UTR           complement(2214..2423)
                     /note="ornithine carbamoyltransferase from Spironucleus 
                     salmonicida"
     CDS             complement(2421..2849)
                     /codon_start=1
                     /product="blasticidin S-deaminase"
                     /label=blasticidin S-deaminase
                     /protein_id="AFS33215.1"
                     /translation="MDQFNISQQDLELVEVATEKITMLYEDNKHHVGAAIRTKTGEIIS
                     AVHIEAYIGRVTVCAEAIAIGSAVSNGQKDFDTIVAVRHPYSDEVDRSIRVVSPCGMCR
                     ELISDYAPDCFVLIEMNGKLVKTTIEELIPLKYTRNLE"
     5UTR           complement(2847..3011)
                     /note="ornithine carbamoyltransferase from Spironucleus 
                     salmonicida"
     5UTR           3034..3147
                     /label=sec61 alpha from Spironucleus salmonicida
                     /note="sec61 alpha from Spironucleus salmonicida"
     CDS             3148..4734
                     /codon_start=1
                     /product="sec61 alpha-2xOLLAS"
                     /label=sec61 alpha-2xOLLAS
                     /protein_id="AFS33216.1"
                     /translation="MSIIYKYRVIYKFRGHFTSSKMSPPSWLKAIEPYTKLIPYV*KAP
                     STVTIELKMFYTFLCLTVFLLGSQIPLYGMRTTIAKDPVFWLRTIFSSARGSVMELGLG
                     PTMTSGLIVRMCVSAGLLRFNRND*DETELFGRF*SLVGAAFTIGQAVLYVFTGMYGNF
                     AELGAFNAIAIVLQLSGASIIL*MLDHMME*GWGVGSG*SLFTTA*TCESIIWKTFSFM
                     KIDRGYGTEIEGAIPAAIYMIVNRGNKLEAVKLAFIRHGLPNLVDVISTLVIFFVVVYL
                     *GIRKNIKIVHEQAGDQMQQSYPIKLLYASSTPMMIISTVTQNVFMIS*AVWRKLGNNF
                     VTGILGKWQENE*NPGSPYPVGGLAWILAPPYSFRSAIFHPIHTLLHAVIVVTISGFAA
                     KMWVNFSGESAKDVAQNLKASKWIIPGFKRDQEMVRELNRYIPVAAMTGGIILGLLSLI
                     ADISGCLVSGSGLLMATTSLVKMYEDYAKKATGAGFWRPPSGFANELGPRLMGKSGFAN
                     ELGPRLMGKGP"
     CDS             4642..4683
                     /codon_start=1
                     /product="Escherichia coli OmpF Linker and mouse Langerin 
                     fusion sequence tag (Park et al., 2008)"
                     /label=OLLAS tag
                     /translation="SGFANELGPRLMGK"
     CDS             4684..4725
                     /codon_start=1
                     /product="Escherichia coli OmpF Linker and mouse Langerin 
                     fusion sequence tag (Park et al., 2008)"
                     /label=OLLAS tag
                     /translation="SGFANELGPRLMGK"
     3UTR           4732..4791
                     /note="ribosomal protein S15A from Spironucleus 
                     salmonicida"
     promoter        complement(4806..4824)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(4834..4850)
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     rep_origin      4992..5447
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"