LOCUS Exported 4678 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pSAT5.nosP.RNAi, complete sequence.
ACCESSION EU049865
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4678)
AUTHORS Dafny-Yelin M, Chung SM, Frankman EL, Tzfira T.
TITLE pSAT RNA interference vectors: a modular series for multiple gene
down-regulation in plants
JOURNAL Plant Physiol. 145 (4), 1272-1281 (2007)
PUBMED 17766396
REFERENCE 2 (bases 1 to 4678)
AUTHORS Dafny-Yelin M, Chung S-M., Frankman EL, Tzfira T.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2007) Department of Molecular, Cellular and
Developmental Biology, The University of Michigan, Ann Arbor, MI
48109, USA
REFERENCE 3 (bases 1 to 4678)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4678
/organism="Cloning vector pSAT5.nosP.RNAi"
/mol_type="other DNA"
/db_xref="taxon:460122"
primer_bind 379..395
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 425..715
/regulatory_class="promoter"
/note="nopaline synthase promoter"
promoter 514..693
/label=NOS promoter
/note="nopaline synthase promoter"
misc_feature 716..756
/note="multiple cloning site I; MCS I"
intron 757..2109
/note="CHSA intron"
intron 759..2107
/gene="chsA"
/label=chsA intron
/note="chalcone synthase A intron from Petunia hybrida"
misc_feature 2110..2153
/note="multiple cloning site II; MCS II"
regulatory 2154..2413
/regulatory_class="terminator"
/note="nopaline synthase terminator"
terminator 2158..2410
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(2457..2473)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 2481..2497
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(2505..2535)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2550..2571
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(2859..3447)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(3618..4478)
/codon_start=1
/gene="bla"
/product="ampicillin resistance protein"
/label=bla
/note="Amp resistance"
/protein_id="ABU39924.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(3618..4478)
/gene="bla"
/label=bla
promoter complement(4479..4583)
/gene="bla"
/label=AmpR promoter
LOCUS Exported 4678 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pSAT5.nosP.RNAi, complete sequence.
ACCESSION EU049865
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4678)
AUTHORS Dafny-Yelin M, Chung SM, Frankman EL, Tzfira T.
TITLE pSAT RNA interference vectors: a modular series for multiple gene
down-regulation in plants
JOURNAL Plant Physiol. 145 (4), 1272-1281 (2007)
PUBMED 17766396
REFERENCE 2 (bases 1 to 4678)
AUTHORS Dafny-Yelin M, Chung S-M., Frankman EL, Tzfira T.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2007) Department of Molecular, Cellular and
Developmental Biology, The University of Michigan, Ann Arbor, MI
48109, USA
REFERENCE 3 (bases 1 to 4678)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4678
/organism="Cloning vector pSAT5.nosP.RNAi"
/mol_type="other DNA"
/db_xref="taxon:460122"
primer_bind 379..395
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 425..715
/regulatory_class="promoter"
/note="nopaline synthase promoter"
promoter 514..693
/label=NOS promoter
/note="nopaline synthase promoter"
misc_feature 716..756
/note="multiple cloning site I; MCS I"
intron 757..2109
/note="CHSA intron"
intron 759..2107
/gene="chsA"
/label=chsA intron
/note="chalcone synthase A intron from Petunia hybrida"
misc_feature 2110..2153
/note="multiple cloning site II; MCS II"
regulatory 2154..2413
/regulatory_class="terminator"
/note="nopaline synthase terminator"
terminator 2158..2410
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(2457..2473)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 2481..2497
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(2505..2535)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2550..2571
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(2859..3447)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(3618..4478)
/codon_start=1
/gene="bla"
/product="ampicillin resistance protein"
/label=bla
/note="Amp resistance"
/protein_id="ABU39924.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(3618..4478)
/gene="bla"
/label=bla
promoter complement(4479..4583)
/gene="bla"
/label=AmpR promoter