LOCUS Exported 4760 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pSAT3.masP.RNAi, complete sequence.
ACCESSION EU049860
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4760)
AUTHORS Dafny-Yelin M, Chung SM, Frankman EL, Tzfira T.
TITLE pSAT RNA interference vectors: a modular series for multiple gene
down-regulation in plants
JOURNAL Plant Physiol. 145 (4), 1272-1281 (2007)
PUBMED 17766396
REFERENCE 2 (bases 1 to 4760)
AUTHORS Dafny-Yelin M, Chung S-M., Frankman EL, Tzfira T.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2007) Department of Molecular, Cellular and
Developmental Biology, The University of Michigan, Ann Arbor, MI
48109, USA
REFERENCE 3 (bases 1 to 4760)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4760
/organism="Cloning vector pSAT3.masP.RNAi"
/mol_type="other DNA"
/db_xref="taxon:460127"
primer_bind 379..395
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 420..807
/regulatory_class="promoter"
/note="manopine synthase promoter"
promoter 426..806
/label=MAS promoter
/note="mannopine synthase promoter (Velten et al., 1984)"
misc_feature 808..848
/note="multiple cloning site I; MCS I"
intron 849..2201
/note="CHSA intron"
intron 851..2199
/gene="chsA"
/label=chsA intron
/note="chalcone synthase A intron from Petunia hybrida"
misc_feature 2202..2245
/note="multiple cloning site II; MCS II"
regulatory 2246..2506
/regulatory_class="terminator"
/note="manopine synthase terminator"
terminator 2249..2501
/label=MAS terminator
/note="mannopine synthase terminator"
primer_bind complement(2539..2555)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 2563..2579
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(2587..2617)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2632..2653
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(2941..3529)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(3700..4560)
/codon_start=1
/gene="bla"
/product="ampicillin resistance protein"
/label=bla
/note="Amp resistance"
/protein_id="ABU39919.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(3700..4560)
/gene="bla"
/label=bla
promoter complement(4561..4665)
/gene="bla"
/label=AmpR promoter
LOCUS Exported 4760 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pSAT3.masP.RNAi, complete sequence.
ACCESSION EU049860
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4760)
AUTHORS Dafny-Yelin M, Chung SM, Frankman EL, Tzfira T.
TITLE pSAT RNA interference vectors: a modular series for multiple gene
down-regulation in plants
JOURNAL Plant Physiol. 145 (4), 1272-1281 (2007)
PUBMED 17766396
REFERENCE 2 (bases 1 to 4760)
AUTHORS Dafny-Yelin M, Chung S-M., Frankman EL, Tzfira T.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2007) Department of Molecular, Cellular and
Developmental Biology, The University of Michigan, Ann Arbor, MI
48109, USA
REFERENCE 3 (bases 1 to 4760)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4760
/organism="Cloning vector pSAT3.masP.RNAi"
/mol_type="other DNA"
/db_xref="taxon:460127"
primer_bind 379..395
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 420..807
/regulatory_class="promoter"
/note="manopine synthase promoter"
promoter 426..806
/label=MAS promoter
/note="mannopine synthase promoter (Velten et al., 1984)"
misc_feature 808..848
/note="multiple cloning site I; MCS I"
intron 849..2201
/note="CHSA intron"
intron 851..2199
/gene="chsA"
/label=chsA intron
/note="chalcone synthase A intron from Petunia hybrida"
misc_feature 2202..2245
/note="multiple cloning site II; MCS II"
regulatory 2246..2506
/regulatory_class="terminator"
/note="manopine synthase terminator"
terminator 2249..2501
/label=MAS terminator
/note="mannopine synthase terminator"
primer_bind complement(2539..2555)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 2563..2579
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(2587..2617)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2632..2653
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(2941..3529)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(3700..4560)
/codon_start=1
/gene="bla"
/product="ampicillin resistance protein"
/label=bla
/note="Amp resistance"
/protein_id="ABU39919.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(3700..4560)
/gene="bla"
/label=bla
promoter complement(4561..4665)
/gene="bla"
/label=AmpR promoter