LOCUS Exported 3655 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pR18GFP, complete sequence.
ACCESSION KP701018
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3655)
AUTHORS Cheng M, Zhang H, Guo S, He J, Li S, Huang X.
TITLE Screening Transcription Factor Genes Involved in Bacterial
Xenobiotic Catabolism using Modified SIGEX Approach
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3655)
AUTHORS Cheng M, Zhang H, Guo S, He J, Li S, Huang X.
TITLE Direct Submission
JOURNAL Submitted (21-JAN-2015) Department of Microbiology, College of Life
Sciences, Nanjing Agricultural University, Tongwei Road #6, Nanjing,
Jiangsu 210095, China
REFERENCE 3 (bases 1 to 3655)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3655
/organism="Cloning vector pR18GFP"
/mol_type="other DNA"
/db_xref="taxon:1663166"
regulatory 47..94
/regulatory_class="terminator"
terminator 47..94
/label=T7 terminator
/note="transcription terminator for bacteriophage T7 RNA
polymerase"
regulatory 306..311
/regulatory_class="ribosome_binding_site"
CDS 319..1038
/codon_start=1
/product="eGFP"
/label=eGFP
/note="green fluorescent protein"
/protein_id="AKL72305.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
EFVTAAGITLGMDELYK"
CDS complement(1185..1508)
/codon_start=1
/gene="lacZ fragment"
/product="LacZ-alpha fragment of beta-galactosidase"
/label=lacZ-alpha
/translation="MTMITNSSSVPGDPLESTCRHASLALAVVLQRRDWENPGVTQLNR
LAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRLMRYFLLTHLCGISHRIWCTLSTICS
DAA"
primer_bind 1418..1434
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
misc_feature 1438..1494
/label=MCS
/note="pUC18/19 multiple cloning site"
primer_bind complement(1504..1520)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 1528..1544
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(1552..1582)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1597..1618
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1906..2494)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(2665..3525)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(3526..3630)
/gene="bla"
/label=AmpR promoter
LOCUS Exported 3655 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pR18GFP, complete sequence.
ACCESSION KP701018
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3655)
AUTHORS Cheng M, Zhang H, Guo S, He J, Li S, Huang X.
TITLE Screening Transcription Factor Genes Involved in Bacterial
Xenobiotic Catabolism using Modified SIGEX Approach
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3655)
AUTHORS Cheng M, Zhang H, Guo S, He J, Li S, Huang X.
TITLE Direct Submission
JOURNAL Submitted (21-JAN-2015) Department of Microbiology, College of Life
Sciences, Nanjing Agricultural University, Tongwei Road #6, Nanjing,
Jiangsu 210095, China
REFERENCE 3 (bases 1 to 3655)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3655
/organism="Cloning vector pR18GFP"
/mol_type="other DNA"
/db_xref="taxon:1663166"
regulatory 47..94
/regulatory_class="terminator"
terminator 47..94
/label=T7 terminator
/note="transcription terminator for bacteriophage T7 RNA
polymerase"
regulatory 306..311
/regulatory_class="ribosome_binding_site"
CDS 319..1038
/codon_start=1
/product="eGFP"
/label=eGFP
/note="green fluorescent protein"
/protein_id="AKL72305.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
EFVTAAGITLGMDELYK"
CDS complement(1185..1508)
/codon_start=1
/gene="lacZ fragment"
/product="LacZ-alpha fragment of beta-galactosidase"
/label=lacZ-alpha
/translation="MTMITNSSSVPGDPLESTCRHASLALAVVLQRRDWENPGVTQLNR
LAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRLMRYFLLTHLCGISHRIWCTLSTICS
DAA"
primer_bind 1418..1434
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
misc_feature 1438..1494
/label=MCS
/note="pUC18/19 multiple cloning site"
primer_bind complement(1504..1520)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 1528..1544
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(1552..1582)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1597..1618
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1906..2494)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(2665..3525)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(3526..3630)
/gene="bla"
/label=AmpR promoter