LOCUS Exported 7020 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Neisserial shuttle/reporter vector pMIDG100, complete sequence.
ACCESSION AY174111
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7020)
AUTHORS Webb SA, Langford PR, Kroll JS.
TITLE A promoter probe plasmid based on green fluorescent protein : a
strategy for studying meningococcal gene expression
JOURNAL Methods Mol. Med. 67, 663-677 (2001)
PUBMED 21337172
REFERENCE 2 (bases 1 to 7020)
AUTHORS Webb SA, O Dwyer CA, Mauchline M, Langford PR, Kroll JS.
TITLE Direct Submission
JOURNAL Submitted (06-NOV-2002) Paediatrics, Imperial College, Norfolk
Place, London W2 1PG, UK
REFERENCE 3 (bases 1 to 7020)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..7020
/organism="Neisserial shuttle/reporter vector pMIDG100"
/mol_type="genomic DNA"
/note="pJSK411; broad-host-range shuttle reporter plasmid
derived from plasmid pLES2; described by Stein et al.
(1993) Gene 25: 241-247"
/db_xref="taxon:217538"
regulatory 12..39
/regulatory_class="terminator"
misc_feature 47..106
/note="synthetic polylinker cloning domain; contains
restriction sites XhoI, HindIII, EcoRI, SalI, ApaI, BamHI,
and NheI"
misc_feature 47..99
/label=MCS
/note="multiple cloning site"
CDS 133..849
/codon_start=1
/gene="GFPmut3"
/product="green fluorescent protein mut3 variant"
/label=GFPmut3
/protein_id="AAO20110.1"
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK
FICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDG
NYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV
NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
gene 133..849
/gene="GFPmut3"
/label=GFPmut3
regulatory 857..883
/regulatory_class="terminator"
primer_bind complement(920..936)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 944..960
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(968..998)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1013..1034
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
misc_feature 1136..5642
/note="domain similar to gonococcal plasmid pJD4 sequence
deposited in GenBank Accession Number U20374"
CDS complement(5715..6509)
/codon_start=1
/gene="aphA-3"
/product="aminoglycoside phosphotransferase"
/label=aphA-3
/note="AphA-3"
/protein_id="AAO20111.1"
/translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKM
TDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED
EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT
PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIA
FCIRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
gene complement(5715..6509)
/gene="aphA-3"
/label=aphA-3
LOCUS Exported 7020 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Neisserial shuttle/reporter vector pMIDG100, complete sequence.
ACCESSION AY174111
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7020)
AUTHORS Webb SA, Langford PR, Kroll JS.
TITLE A promoter probe plasmid based on green fluorescent protein : a
strategy for studying meningococcal gene expression
JOURNAL Methods Mol. Med. 67, 663-677 (2001)
PUBMED 21337172
REFERENCE 2 (bases 1 to 7020)
AUTHORS Webb SA, O Dwyer CA, Mauchline M, Langford PR, Kroll JS.
TITLE Direct Submission
JOURNAL Submitted (06-NOV-2002) Paediatrics, Imperial College, Norfolk
Place, London W2 1PG, UK
REFERENCE 3 (bases 1 to 7020)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..7020
/organism="Neisserial shuttle/reporter vector pMIDG100"
/mol_type="genomic DNA"
/note="pJSK411; broad-host-range shuttle reporter plasmid
derived from plasmid pLES2; described by Stein et al.
(1993) Gene 25: 241-247"
/db_xref="taxon:217538"
regulatory 12..39
/regulatory_class="terminator"
misc_feature 47..106
/note="synthetic polylinker cloning domain; contains
restriction sites XhoI, HindIII, EcoRI, SalI, ApaI, BamHI,
and NheI"
misc_feature 47..99
/label=MCS
/note="multiple cloning site"
CDS 133..849
/codon_start=1
/gene="GFPmut3"
/product="green fluorescent protein mut3 variant"
/label=GFPmut3
/protein_id="AAO20110.1"
/translation="MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK
FICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDG
NYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV
NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLE
FVTAAGITHGMDELYK"
gene 133..849
/gene="GFPmut3"
/label=GFPmut3
regulatory 857..883
/regulatory_class="terminator"
primer_bind complement(920..936)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 944..960
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(968..998)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 1013..1034
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
misc_feature 1136..5642
/note="domain similar to gonococcal plasmid pJD4 sequence
deposited in GenBank Accession Number U20374"
CDS complement(5715..6509)
/codon_start=1
/gene="aphA-3"
/product="aminoglycoside phosphotransferase"
/label=aphA-3
/note="AphA-3"
/protein_id="AAO20111.1"
/translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKM
TDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED
EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT
PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIA
FCIRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
gene complement(5715..6509)
/gene="aphA-3"
/label=aphA-3