LOCUS Exported 7485 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pME9, complete sequence.
ACCESSION KC679683
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7485)
AUTHORS Audtho M, Ratlertkarn M, Promdonkoy B.
TITLE pME9, a new vector for sporulation stage expression in Bacillus spp.
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7485)
AUTHORS Audtho M, Ratlertkarn M, Promdonkoy B.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2013) National Center for Genetic Engineering and
Biotechnology, National Science and Technology Development Agency,
113 Phaholyothin Road, Klong Nueng, Klong Luang, Pathum Thani 12120,
Thailand
REFERENCE 3 (bases 1 to 7485)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7485
/organism="Expression vector pME9"
/mol_type="other DNA"
/label=derived from Bacillus cereus sequence
/note="derived from Bacillus cereus sequence"
/db_xref="taxon:1296589"
misc_feature 13..18
/label=CTGCAG recognition site for PstI
/note="CTGCAG recognition site for PstI"
regulatory 18..270
/regulatory_class="promoter"
/note="from Bacillus thuringiensis cyt2Aa gene"
misc_feature 269..355
/note="contains cloning sites EcoRI, EcoRV, HindIII, BglII,
SalI, NotI, SacI, SacII, PstI, XbaI, XhoI, ApaI, KpnI"
promoter complement(368..386)
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
primer_bind complement(403..421)
/label=M13 reverse primer
/note="M13 reverse primer"
primer_bind complement(407..423)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
misc_feature complement(422..441)
/label=M13 pUC reverse primer
/note="M13 pUC reverse primer"
protein_bind 431..447
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
regulatory complement(452..485)
/regulatory_class="promoter"
/note="from lac gene"
promoter complement(455..485)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 500..521
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(809..1397)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(1568..2428)
/codon_start=1
/product="ampicillin resistance protein"
/label=ampicillin resistance protein
/protein_id="AGH24532.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(2429..2533)
/gene="bla"
/label=AmpR promoter
regulatory complement(2470..2796)
/regulatory_class="promoter"
/note="from ampicillin resistance protein gene"
rep_origin 2560..3015
/direction=RIGHT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
rep_origin 2577..2883
/label=f1
/note="f1"
primer_bind 3141..3153
/label=M13 forward primer
/note="M13 forward primer"
primer_bind 3156..3172
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
primer_bind 3179..3197
/label=T7 promoter primer
/note="T7 promoter primer"
promoter 3179..3197
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
misc_difference 3539
/replace="g"
/note="G > C to delete EcoRI site of DNA fragment from
pBC16"
CDS 4057..5061
/codon_start=1
/gene="repB"
/product="RepB replication protein"
/label=repB
/note="from Enterococcus faecalis plasmid pAM-alpha-1"
/db_xref="GI:22652809"
/protein_id="AAN03827.1"
/translation="MGVSFNIMCPNSSIYSDEKSRVLVDKTKSGKVRPWREKKIANVDY
FELLHILEFKKAERVKDCAEILEYKQNRETGERKLYRVWFCKSRLCPMCNWRRAMKHGI
QSQKVVAEVIKQKPTVRWLFLTLTVKNVYDGEELNKSLSDMAQGFRRMMQYKKINKNLV
GFMRATEVTINNKDNSYNQHMHVLVCVEPTYFKNTENYVNQKQWIQFWKKAMKLDYDPN
VKVQMIRPKNKYKSDIQSAIDETAKYPVKDTDFMTDDEEKNLKRLSDLEEGLHRKRLIS
YGGLLKEIHKKLNLDDTEEGDLIHTDDDEKADEDGFSIIAMWNWERKNYFIKE"
CDS 4078..5061
/codon_start=1
/gene="repU"
/product="RepU"
/label=repU
/protein_id="AGH24533.1"
/translation="MCPNSSIYSDEKSRVLVDKTKSGKVRPWREKKIANVDYFELLHIL
EFKKAERVKDCAEILEYKQNRETGERKLYRVWFCKSRLCPMCNWRRAMKHGIQSQKVVA
EVIKQKPTVRWLFLTLTVKNVYDGEELNKSLSDMAQGFRRMMQYKKINKNLVGFMRATE
VTINNKDNSYNQHMHVLVCVEPTYFKNTENYVNQKQWIQFWKKAMKLDYDPNVKVQMIR
PKNKYKSDIQSAIDETAKYPVKDTDFMTDDEEKNLKRLSDLEEGLHRKRLISYGGLLKE
IHKKLNLDDTEEGDLIHTDDDEKADEDGFSIIAMWNWERKNYFIKE"
gene 4078..5061
/gene="repU"
/label=repU
CDS 5261..6637
/codon_start=1
/product="tetracycline resistance protein"
/label=tetracycline resistance protein
/note="for selection in tetracycline containing media"
/protein_id="AGH24534.1"
/translation="MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFN
KPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFS
LLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA
HYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYS
ISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPY
MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTA
SFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT
GIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLVTLNVYKHSQRDF
"
misc_difference 5261
/replace="g"
/note="G > A to change start codon from GTG to ATG for
improvement of transformation efficiency in the media
containing tetracycline"
misc_difference 6695
/replace="g"
/note="G > C to delete EcoRI site in DNA fragment from
pBC16"
rep_origin 6754..7030
/label=ori L
/note="ori L"
misc_feature 7201..7485
/label=from mob gene
/note="from mob gene"
LOCUS Exported 7485 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pME9, complete sequence.
ACCESSION KC679683
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7485)
AUTHORS Audtho M, Ratlertkarn M, Promdonkoy B.
TITLE pME9, a new vector for sporulation stage expression in Bacillus spp.
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7485)
AUTHORS Audtho M, Ratlertkarn M, Promdonkoy B.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-2013) National Center for Genetic Engineering and
Biotechnology, National Science and Technology Development Agency,
113 Phaholyothin Road, Klong Nueng, Klong Luang, Pathum Thani 12120,
Thailand
REFERENCE 3 (bases 1 to 7485)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7485
/organism="Expression vector pME9"
/mol_type="other DNA"
/label=derived from Bacillus cereus sequence
/note="derived from Bacillus cereus sequence"
/db_xref="taxon:1296589"
misc_feature 13..18
/label=CTGCAG recognition site for PstI
/note="CTGCAG recognition site for PstI"
regulatory 18..270
/regulatory_class="promoter"
/note="from Bacillus thuringiensis cyt2Aa gene"
misc_feature 269..355
/note="contains cloning sites EcoRI, EcoRV, HindIII, BglII,
SalI, NotI, SacI, SacII, PstI, XbaI, XhoI, ApaI, KpnI"
promoter complement(368..386)
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
primer_bind complement(403..421)
/label=M13 reverse primer
/note="M13 reverse primer"
primer_bind complement(407..423)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
misc_feature complement(422..441)
/label=M13 pUC reverse primer
/note="M13 pUC reverse primer"
protein_bind 431..447
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
regulatory complement(452..485)
/regulatory_class="promoter"
/note="from lac gene"
promoter complement(455..485)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 500..521
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(809..1397)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(1568..2428)
/codon_start=1
/product="ampicillin resistance protein"
/label=ampicillin resistance protein
/protein_id="AGH24532.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(2429..2533)
/gene="bla"
/label=AmpR promoter
regulatory complement(2470..2796)
/regulatory_class="promoter"
/note="from ampicillin resistance protein gene"
rep_origin 2560..3015
/direction=RIGHT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
rep_origin 2577..2883
/label=f1
/note="f1"
primer_bind 3141..3153
/label=M13 forward primer
/note="M13 forward primer"
primer_bind 3156..3172
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
primer_bind 3179..3197
/label=T7 promoter primer
/note="T7 promoter primer"
promoter 3179..3197
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
misc_difference 3539
/replace="g"
/note="G > C to delete EcoRI site of DNA fragment from
pBC16"
CDS 4057..5061
/codon_start=1
/gene="repB"
/product="RepB replication protein"
/label=repB
/note="from Enterococcus faecalis plasmid pAM-alpha-1"
/db_xref="GI:22652809"
/protein_id="AAN03827.1"
/translation="MGVSFNIMCPNSSIYSDEKSRVLVDKTKSGKVRPWREKKIANVDY
FELLHILEFKKAERVKDCAEILEYKQNRETGERKLYRVWFCKSRLCPMCNWRRAMKHGI
QSQKVVAEVIKQKPTVRWLFLTLTVKNVYDGEELNKSLSDMAQGFRRMMQYKKINKNLV
GFMRATEVTINNKDNSYNQHMHVLVCVEPTYFKNTENYVNQKQWIQFWKKAMKLDYDPN
VKVQMIRPKNKYKSDIQSAIDETAKYPVKDTDFMTDDEEKNLKRLSDLEEGLHRKRLIS
YGGLLKEIHKKLNLDDTEEGDLIHTDDDEKADEDGFSIIAMWNWERKNYFIKE"
CDS 4078..5061
/codon_start=1
/gene="repU"
/product="RepU"
/label=repU
/protein_id="AGH24533.1"
/translation="MCPNSSIYSDEKSRVLVDKTKSGKVRPWREKKIANVDYFELLHIL
EFKKAERVKDCAEILEYKQNRETGERKLYRVWFCKSRLCPMCNWRRAMKHGIQSQKVVA
EVIKQKPTVRWLFLTLTVKNVYDGEELNKSLSDMAQGFRRMMQYKKINKNLVGFMRATE
VTINNKDNSYNQHMHVLVCVEPTYFKNTENYVNQKQWIQFWKKAMKLDYDPNVKVQMIR
PKNKYKSDIQSAIDETAKYPVKDTDFMTDDEEKNLKRLSDLEEGLHRKRLISYGGLLKE
IHKKLNLDDTEEGDLIHTDDDEKADEDGFSIIAMWNWERKNYFIKE"
gene 4078..5061
/gene="repU"
/label=repU
CDS 5261..6637
/codon_start=1
/product="tetracycline resistance protein"
/label=tetracycline resistance protein
/note="for selection in tetracycline containing media"
/protein_id="AGH24534.1"
/translation="MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFN
KPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFS
LLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA
HYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYS
ISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPY
MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTA
SFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT
GIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLVTLNVYKHSQRDF
"
misc_difference 5261
/replace="g"
/note="G > A to change start codon from GTG to ATG for
improvement of transformation efficiency in the media
containing tetracycline"
misc_difference 6695
/replace="g"
/note="G > C to delete EcoRI site in DNA fragment from
pBC16"
rep_origin 6754..7030
/label=ori L
/note="ori L"
misc_feature 7201..7485
/label=from mob gene
/note="from mob gene"