LOCUS       Exported               12942 bp ds-DNA     circular SYN 18-DEC-2018
DEFINITION  Binary vector pINDEX3, complete sequence.
ACCESSION   AF294982
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 12942)
  AUTHORS   Ouwerkerk PB, de Kam RJ, Hoge JH, Meijer AH.
  TITLE     Glucocorticoid-inducible gene expression in rice
  JOURNAL   Planta 213 (3), 370-378 (2001)
  PUBMED    11506359
REFERENCE   2  (bases 1 to 12942)
  AUTHORS   Ouwerkerk PBF.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-AUG-2000) Dept. of Molecular Cell Biology, Institute 
            for Molecular Plant Sciences, Wassenaarseweg 64, Leiden 2333 AL, 
            Netherlands
REFERENCE   3  (bases 1 to 12942)
  AUTHORS   .
  TITLE     Direct Submission
FEATURES             Location/Qualifiers
     source          1..12942
                     /organism="Binary vector pINDEX3"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:142847"
     misc_feature    1..12942
                     /note="pINDEX3 is a binary vector designed for 
                     glucocorticoid-inducible gene expression in plants and is 
                     optimized for use in rice; pINDEX3 is part of a series of 
                     four pINDEX vectors (Genbank Accession Numbers 
                     AF294979-AF294982). pINDEX vectors are based on parts of 
                     pCAMBIA-1300 encoded by GenBank Accession Number AF234296 
                     and pTA7002 (Aoyama, T. and Chua N.-H., 1997, Plant J. 
                     11:605-612)"
     regulatory      29..858
                     /regulatory_class="promoter"
                     /note="CaMV35S; 35S promoter from CaMV"
     promoter        517..862
                     /label=CaMV 35S promoter
                     /note="strong constitutive promoter from cauliflower mosaic
                     virus"
     gene            884..2197
                     /gene="GVG"
                     /label=GVG
     CDS             896..2197
                     /codon_start=1
                     /gene="GVG"
                     /product="GVG"
                     /label=GVG
                     /note="chimeric transcription factor; contains 
                     Saccharomyces cerevisiae GAL4BD, Herpes simplex VP16AD and 
                     Rattus norvegicus GR domain"
                     /protein_id="AAG38035.1"
                     /translation="MKLLSSIEQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTK
                     RSPLTRAHLTEVESRLERLEQLFLLIFPRSSAPPTDVSLGDELHLDGEDVAMAHADALD
                     DFDLDMLGDGDSPGPGFTPHDSAPYGALDMADFEFEQMFTDALGIDEYGGDPIQQATAG
                     VSQDTSENPNKTIVPAALPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNML
                     GGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQSSGNLLCFAP
                     DLIINEQRMSLPCMYDQCKHMLFVSSELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQE
                     LFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLTYCFQTFLDK
                     TMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK"
     CDS             1124..1357
                     /codon_start=1
                     /gene="UL48"
                     /product="transcriptional activation domain of herpes 
                     simplex virus protein VP16 (Triezenberg et al., 1988; 
                     Cousens et al., 1989)"
                     /label=VP16 AD
                     /translation="APPTDVSLGDELHLDGEDVAMAHADALDDFDLDMLGDGDSPGPGF
                     TPHDSAPYGALDMADFEFEQMFTDALGIDEYGG"
     3UTR           2224..2520
                     /label=Pisum sativum RbcS-E9 polyA signal
                     /note="Pisum sativum RbcS-E9 polyA signal"
     terminator      2765..3017
                     /label=NOS terminator
                     /note="nopaline synthase terminator and poly(A) signal"
     regulatory      3069..3139
                     /regulatory_class="promoter"
                     /note="4UAS; tetramer of the GVG binding site"
     regulatory      3186..3243
                     /regulatory_class="promoter"
                     /note="CaMV 35S"
     promoter        3188..3234
                     /label=minimal CaMV 35S promoter
                     /note="minimal 35S promoter from cauliflower mosaic virus"
     misc_feature    3265..3322
                     /note="multiple cloning site; 
                     BbrPI-SpeI-Sse8387I-XhoI-Bsp1407I-StuI are unique."
     3UTR           3326..3794
                     /label=Pisum sativum RbcS-3A polyA signal
                     /note="Pisum sativum RbcS-3A polyA signal"
     primer_bind     complement(3833..3849)
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     misc_feature    4052..4076
                     /label=RB T-DNA repeat
                     /note="right border repeat from nopaline C58 T-DNA"
     misc_feature    4071..4096
                     /label=right border repeat from C58 T-DNA
                     /note="right border repeat from C58 T-DNA"
     CDS             5376..6005
                     /codon_start=1
                     /product="stability protein from the Pseudomonas plasmid 
                     pVS1 (Heeb et al., 2000)"
                     /label=pVS1 StaA
                     /translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
                     DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
                     VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
                     LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"
     CDS             6439..7506
                     /codon_start=1
                     /product="replication protein from the Pseudomonas plasmid 
                     pVS1 (Heeb et al., 2000)"
                     /label=pVS1 RepA
                     /translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
                     AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
                     DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
                     VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
                     ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
                     RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
                     MRYRNLIEGEASAGS"
     rep_origin      7572..7766
                     /label=pVS1 oriV
                     /note="origin of replication for the Pseudomonas plasmid 
                     pVS1 (Heeb et al., 2000)"
     misc_feature    8110..8250
                     /label=bom
                     /note="basis of mobility region from pBR322"
     rep_origin      complement(8436..9024)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     CDS             complement(9111..9905)
                     /codon_start=1
                     /gene="aphA-3"
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKM
                     TDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED
                     EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT
                     PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIA
                     FCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
     misc_feature    10330..10355
                     /label=left border repeat from C58 T-DNA
                     /note="left border repeat from C58 T-DNA"
     misc_feature    10330..10354
                     /label=LB T-DNA repeat
                     /note="left border repeat from nopaline C58 T-DNA"
     3UTR           complement(10422..10641)
                     /label=CaMV (polyA signal
                     /note="CaMV (polyA signal"
     polyA_signal    10432..10606
                     /label=CaMV poly(A) signal
                     /note="cauliflower mosaic virus polyadenylation signal"
     gene            complement(10657..12699)
                     /gene="hptII"
                     /label=hptII
     CDS             complement(join(10657..11349,11540..11872))
                     /codon_start=1
                     /gene="hptII"
                     /product="hygromycin phosphotransferase"
                     /label=hptII
                     /note="hygromycin resistance"
                     /protein_id="AAG38034.1"
                     /translation="MKKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRG
                     YVLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLP
                     ETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQ
                     TVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF
                     GDSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDG
                     NFDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAK
                     K"
     exon            complement(10657..11349)
                     /gene="hptII"
                     /number=1
     intron          11344..11533
                     /label=cat1 intron
                     /note="castor bean catalase intron, modified"
     intron          complement(11350..11539)
                     /gene="hptII"
                     /note="derived from Ricinus communis catalase-1 intron 
                     presented in Genbank Accession Number D21161"
     exon            complement(11540..11872)
                     /gene="hptII"
                     /number=2
     regulatory      complement(11919..12699)
                     /regulatory_class="promoter"
                     /gene="hptII"
                     /note="CaMV35S; 35S promoter from CaMV"
     promoter        complement(11951..12628)
                     /label=CaMV 35S promoter (enhanced)
                     /note="cauliflower mosaic virus 35S promoter with a 
                     duplicated enhancer region"
     protein_bind    12819..12840
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        12855..12885
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    12893..12909
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     12917..12933
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"