LOCUS Exported 6807 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pFY20, complete sequence.
ACCESSION EU665638
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 6807)
AUTHORS Wahls WP, Davidson MK.
TITLE Low-copy episomal vector pFY20 and high-saturation coverage genomic
libraries for the fission yeast Schizosaccharomyces pombe
JOURNAL Yeast 25 (9), 643-650 (2008)
PUBMED 18613214
REFERENCE 2 (bases 1 to 6807)
AUTHORS Wahls WP, Davidson MK.
TITLE Direct Submission
JOURNAL Submitted (21-APR-2008) Biochemistry and Molecular Biology,
University of Arkansas for Medical Sciences, 4301 West Markham
Street (slot 516), Little Rock, AR 72205-7199, USA
REFERENCE 3 (bases 1 to 6807)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..6807
/organism="Cloning vector pFY20"
/mol_type="other DNA"
/note="replicates in fission yeast Schizosaccharomyces
pombe"
/db_xref="taxon:526520"
misc_feature 237..1551
/note="stb; plasmid stability element derived from
Schizosaccharomyces pombe"
rep_origin 1552..2479
/note="ars1; derived from Schizosaccharomyces pombe"
rep_origin 1900..2681
/label=ars1
/note="Schizosaccharomyces pombe autonomously replicating
sequence ars1"
CDS 3332..4126
/codon_start=1
/product="Ura4"
/EC_number="4.1.1.23"
/label=Ura4
/note="orotidine 5-phosphate decarboxylase"
/protein_id="ACD14087.1"
/translation="MDARVFQSYSARAEGMKNPIAKELLALMEEKQSNLSVAVDLTKKS
EILELVDKIGPYVCVIKTHIDVVEDFDQDMVEKLVALGKKHRFLIFEDRKFADIGNTVK
LQYASGVYKIASWAHITNCHTVPGEGIIQGLKEVGLPLGRGLLLLAEMSSKGSLATGSY
TEKTLEWFEKHTDFCFGFIAGRRFPNLQSDYITMSPGIGLDVKGDGLGQQYRTPEEVIV
NCGSDIIIVGRGVYGAGRNPVVEAKRYREAGWKAYQQRLSQH"
primer_bind complement(4586..4602)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 4610..4626
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(4634..4664)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 4679..4700
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin 4931..5041
/label=ori derived from pBR322 of Escherichia coli
/note="ori derived from pBR322 of Escherichia coli"
rep_origin complement(4988..5576)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(5747..6607)
/codon_start=1
/product="beta-lactamase"
/label=beta-lactamase
/protein_id="ACD14088.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(6608..6712)
/gene="bla"
/label=AmpR promoter
LOCUS Exported 6807 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pFY20, complete sequence.
ACCESSION EU665638
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 6807)
AUTHORS Wahls WP, Davidson MK.
TITLE Low-copy episomal vector pFY20 and high-saturation coverage genomic
libraries for the fission yeast Schizosaccharomyces pombe
JOURNAL Yeast 25 (9), 643-650 (2008)
PUBMED 18613214
REFERENCE 2 (bases 1 to 6807)
AUTHORS Wahls WP, Davidson MK.
TITLE Direct Submission
JOURNAL Submitted (21-APR-2008) Biochemistry and Molecular Biology,
University of Arkansas for Medical Sciences, 4301 West Markham
Street (slot 516), Little Rock, AR 72205-7199, USA
REFERENCE 3 (bases 1 to 6807)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..6807
/organism="Cloning vector pFY20"
/mol_type="other DNA"
/note="replicates in fission yeast Schizosaccharomyces
pombe"
/db_xref="taxon:526520"
misc_feature 237..1551
/note="stb; plasmid stability element derived from
Schizosaccharomyces pombe"
rep_origin 1552..2479
/note="ars1; derived from Schizosaccharomyces pombe"
rep_origin 1900..2681
/label=ars1
/note="Schizosaccharomyces pombe autonomously replicating
sequence ars1"
CDS 3332..4126
/codon_start=1
/product="Ura4"
/EC_number="4.1.1.23"
/label=Ura4
/note="orotidine 5-phosphate decarboxylase"
/protein_id="ACD14087.1"
/translation="MDARVFQSYSARAEGMKNPIAKELLALMEEKQSNLSVAVDLTKKS
EILELVDKIGPYVCVIKTHIDVVEDFDQDMVEKLVALGKKHRFLIFEDRKFADIGNTVK
LQYASGVYKIASWAHITNCHTVPGEGIIQGLKEVGLPLGRGLLLLAEMSSKGSLATGSY
TEKTLEWFEKHTDFCFGFIAGRRFPNLQSDYITMSPGIGLDVKGDGLGQQYRTPEEVIV
NCGSDIIIVGRGVYGAGRNPVVEAKRYREAGWKAYQQRLSQH"
primer_bind complement(4586..4602)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 4610..4626
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(4634..4664)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 4679..4700
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin 4931..5041
/label=ori derived from pBR322 of Escherichia coli
/note="ori derived from pBR322 of Escherichia coli"
rep_origin complement(4988..5576)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(5747..6607)
/codon_start=1
/product="beta-lactamase"
/label=beta-lactamase
/protein_id="ACD14088.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(6608..6712)
/gene="bla"
/label=AmpR promoter