LOCUS Exported 4024 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pFF714, complete sequence.
ACCESSION KM923744
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4024)
AUTHORS Farzadfard F, Lu TK.
TITLE Synthetic biology. Genomically encoded analog memory with precise in
vivo DNA writing in living cell populations
JOURNAL Science 346 (6211), 1256272 (2014)
PUBMED 25395541
REFERENCE 2 (bases 1 to 4024)
AUTHORS Farzadfard F, Lu T.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2014) Biological Engineering, MIT, 77
Massachusetts Avenue, NE47, Cambridge, MA 02139, USA
REFERENCE 3 (bases 1 to 4024)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4024
/organism="Cloning vector pFF714"
/mol_type="other DNA"
/db_xref="taxon:1572885"
regulatory 15..88
/regulatory_class="promoter"
protein_bind 17..33
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
protein_bind 40..56
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
misc_feature 97..178
/note="primer for the Ec86 RT; msr"
misc_feature complement(168..301)
/note="template for Ec86 RT; msd(galK_OFF)"
CDS 321..1283
/codon_start=1
/product="retron EC86 RNA-directed DNA polymerase-like
protein"
/label=retron EC86 RNA-directed DNA polymerase-like pr
/protein_id="AIZ09102.1"
/translation="MKSAEYLNTFRLRNLGLPVMNNLHDMSKATRISVETLRLLIYTAD
FRYRIYTVEKKGPEKRMRTIYQPSRELKALQGWVLRNILDKLSSSPFSIGFEKHQSILN
NATPHIGANFILNIDLEDFFPSLTANKVFGVFHSLGYNRLISSVLTKICCYKNLLPQGA
PSSPKLANLICSKLDYRIQGYAGSRGLIYTRYADDLTLSAQSMKKVVKARDFLFSIIPS
EGLVINSKKTCISGPRSQRKVTGLVISQEKVGIGREKYKEIRAKIHHIFCGKSSEIEHV
RGWLSFILSVDSKSHRRLITYISKLEKKYGKNPLNKAKT"
CDS 1320..2105
/codon_start=1
/product="bet protein"
/label=bet protein
/note="recombination"
/protein_id="AIZ09103.1"
/translation="MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFI
ALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESC
TCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLA
FGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLP
LCSQIFRRDIRASSELTQAEAVKALGFLKQKAAEQKVAA"
regulatory 2118..2222
/regulatory_class="terminator"
terminator 2123..2209
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
rep_origin 2365..3035
/label=colE1
/note="colE1"
rep_origin complement(2373..2961)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
terminator 3049..3143
/label=lambda t0 terminator
/note="transcription terminator from phage lambda"
CDS complement(3164..3823)
/codon_start=1
/product="CmR"
/label=CmR
/protein_id="AIZ09104.1"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
promoter complement(3824..3926)
/label=cat promoter
/note="promoter of the E. coli cat gene encoding
chloramphenicol acetyltransferase"
LOCUS Exported 4024 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pFF714, complete sequence.
ACCESSION KM923744
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4024)
AUTHORS Farzadfard F, Lu TK.
TITLE Synthetic biology. Genomically encoded analog memory with precise in
vivo DNA writing in living cell populations
JOURNAL Science 346 (6211), 1256272 (2014)
PUBMED 25395541
REFERENCE 2 (bases 1 to 4024)
AUTHORS Farzadfard F, Lu T.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2014) Biological Engineering, MIT, 77
Massachusetts Avenue, NE47, Cambridge, MA 02139, USA
REFERENCE 3 (bases 1 to 4024)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4024
/organism="Cloning vector pFF714"
/mol_type="other DNA"
/db_xref="taxon:1572885"
regulatory 15..88
/regulatory_class="promoter"
protein_bind 17..33
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
protein_bind 40..56
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
misc_feature 97..178
/note="primer for the Ec86 RT; msr"
misc_feature complement(168..301)
/note="template for Ec86 RT; msd(galK_OFF)"
CDS 321..1283
/codon_start=1
/product="retron EC86 RNA-directed DNA polymerase-like
protein"
/label=retron EC86 RNA-directed DNA polymerase-like pr
/protein_id="AIZ09102.1"
/translation="MKSAEYLNTFRLRNLGLPVMNNLHDMSKATRISVETLRLLIYTAD
FRYRIYTVEKKGPEKRMRTIYQPSRELKALQGWVLRNILDKLSSSPFSIGFEKHQSILN
NATPHIGANFILNIDLEDFFPSLTANKVFGVFHSLGYNRLISSVLTKICCYKNLLPQGA
PSSPKLANLICSKLDYRIQGYAGSRGLIYTRYADDLTLSAQSMKKVVKARDFLFSIIPS
EGLVINSKKTCISGPRSQRKVTGLVISQEKVGIGREKYKEIRAKIHHIFCGKSSEIEHV
RGWLSFILSVDSKSHRRLITYISKLEKKYGKNPLNKAKT"
CDS 1320..2105
/codon_start=1
/product="bet protein"
/label=bet protein
/note="recombination"
/protein_id="AIZ09103.1"
/translation="MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFI
ALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESC
TCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLA
FGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLP
LCSQIFRRDIRASSELTQAEAVKALGFLKQKAAEQKVAA"
regulatory 2118..2222
/regulatory_class="terminator"
terminator 2123..2209
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
rep_origin 2365..3035
/label=colE1
/note="colE1"
rep_origin complement(2373..2961)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
terminator 3049..3143
/label=lambda t0 terminator
/note="transcription terminator from phage lambda"
CDS complement(3164..3823)
/codon_start=1
/product="CmR"
/label=CmR
/protein_id="AIZ09104.1"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
promoter complement(3824..3926)
/label=cat promoter
/note="promoter of the E. coli cat gene encoding
chloramphenicol acetyltransferase"