LOCUS Exported 4141 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pFabZip1, complete sequence.
ACCESSION AY190524
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4141)
AUTHORS Kerschbaumer RJ, Himmler G.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2002) Strain Improvement, Institute of Applied
Microbiology, Muthgasse 18, Vienna, A 1190, Austria
REFERENCE 2 (bases 1 to 4141)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4141
/organism="Cloning vector pFabZip1"
/mol_type="genomic DNA"
/db_xref="taxon:220665"
promoter 96..200
/gene="bla"
/label=AmpR promoter
CDS 201..1061
/codon_start=1
/product="beta-lactamase"
/label=beta-lactamase
/protein_id="AAO39006.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
rep_origin 1232..1820
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
protein_bind 2108..2129
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 2144..2174
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2182..2198
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 2206..2222
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 2274..2339
/codon_start=1
/gene="pelB (fragment)"
/product="leader peptide for secretion"
/label=pelB signal sequence
/translation="MKYLLPTAAAGLLLLAAQPAMA"
C_region 2359..2832
/note="constant domain from human IgG heavy chain (CH1)
fused to hinge region and leucine-zipper for dimerization;
contains C-terminal hexahistidine tag"
CDS 2734..2790
/codon_start=1
/product="GCN4 peptide optimized to improve solubility
while preserving binding to an scFv-GFP fusion protein
(Tanenbaum et al., 2014)"
/label=GCN4_v4
/translation="EELLSKNYHLENEVARLKK"
CDS 2812..2829
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
C_region 2940..3260
/label=human IgG kappa light chain constant domain
/note="human IgG kappa light chain constant domain"
primer_bind complement(3273..3289)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin 3500..3955
/direction=RIGHT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
LOCUS Exported 4141 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pFabZip1, complete sequence.
ACCESSION AY190524
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4141)
AUTHORS Kerschbaumer RJ, Himmler G.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2002) Strain Improvement, Institute of Applied
Microbiology, Muthgasse 18, Vienna, A 1190, Austria
REFERENCE 2 (bases 1 to 4141)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4141
/organism="Cloning vector pFabZip1"
/mol_type="genomic DNA"
/db_xref="taxon:220665"
promoter 96..200
/gene="bla"
/label=AmpR promoter
CDS 201..1061
/codon_start=1
/product="beta-lactamase"
/label=beta-lactamase
/protein_id="AAO39006.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
rep_origin 1232..1820
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
protein_bind 2108..2129
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 2144..2174
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2182..2198
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 2206..2222
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 2274..2339
/codon_start=1
/gene="pelB (fragment)"
/product="leader peptide for secretion"
/label=pelB signal sequence
/translation="MKYLLPTAAAGLLLLAAQPAMA"
C_region 2359..2832
/note="constant domain from human IgG heavy chain (CH1)
fused to hinge region and leucine-zipper for dimerization;
contains C-terminal hexahistidine tag"
CDS 2734..2790
/codon_start=1
/product="GCN4 peptide optimized to improve solubility
while preserving binding to an scFv-GFP fusion protein
(Tanenbaum et al., 2014)"
/label=GCN4_v4
/translation="EELLSKNYHLENEVARLKK"
CDS 2812..2829
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
C_region 2940..3260
/label=human IgG kappa light chain constant domain
/note="human IgG kappa light chain constant domain"
primer_bind complement(3273..3289)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin 3500..3955
/direction=RIGHT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"