LOCUS Exported 9211 bp ds-DNA circular SYN 13-MAY-2021
DEFINITION Gateway-compatible Entry vector, with insert of NSP3 genes CDS from
SARS-CoV-2 isolate Wuhan-Hu-1.
ACCESSION .
VERSION .
KEYWORDS pDONR207 SARS-CoV-2 NSP3
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 9211)
AUTHORS Kim DK, Knapp JJ, Kuang D, Chawla A, Cassonnet P, Lee H,
Sheykhkarimli D, Samavarchi-Tehrani P, Abdouni H, Rayhan A, Li R,
Pogoutse O, Coyaud E, van der Werf S, Demeret C, Gingras AC, Taipale
M, Raught B, Jacob Y, Roth FP
TITLE A Comprehensive, Flexible Collection of SARS-CoV-2 Coding Regions.
JOURNAL G3 (Bethesda). 2020 Aug 6. pii: g3.120.401554. doi:
10.1534/g3.120.401554.
PUBMED 32763951
REFERENCE 2 (bases 1 to 9211)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "G3
(Bethesda). 2020 Aug 6. pii: g3.120.401554. doi:
10.1534/g3.120.401554."
FEATURES Location/Qualifiers
source 1..9211
/organism="synthetic DNA construct"
/mol_type="other DNA"
terminator 56..83
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
terminator 175..261
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
protein_bind 314..413
/gene="mutant version of attL"
/label=attL1
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
protein_bind complement(6255..6354)
/gene="mutant version of attL"
/label=attL2
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
primer_bind complement(6466..6485)
/label=pENTR-R
/note="pENTR vectors, reverse primer"
primer_bind complement(6544..6563)
/label=Kan-R
/note="Kanamycin resistance gene, reverse primer"
CDS complement(7137..7670)
/codon_start=1
/gene="aacC1"
/product="gentamycin acetyltransferase"
/label=GmR
/note="confers resistance to gentamycin"
/translation="MLRSSNDVTQQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAALD
LFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAVVGALAAYVLPKFEQPRS
EIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIR
EEVMHFDIDPSTAT"
promoter complement(7859..7887)
/gene="intI1 (promoter lies within the coding sequence)"
/label=Pc promoter
/note="class 1 integron promoter"
rep_origin 8544..9132
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
primer_bind 9033..9052
/label=pBR322ori-F
/note="pBR322 origin, forward primer"
LOCUS Exported 9211 bp ds-DNA circular SYN 13-MAY-2021
DEFINITION Gateway-compatible Entry vector, with insert of NSP3 genes CDS from
SARS-CoV-2 isolate Wuhan-Hu-1.
ACCESSION .
VERSION .
KEYWORDS pDONR207 SARS-CoV-2 NSP3
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 9211)
AUTHORS Kim DK, Knapp JJ, Kuang D, Chawla A, Cassonnet P, Lee H,
Sheykhkarimli D, Samavarchi-Tehrani P, Abdouni H, Rayhan A, Li R,
Pogoutse O, Coyaud E, van der Werf S, Demeret C, Gingras AC, Taipale
M, Raught B, Jacob Y, Roth FP
TITLE A Comprehensive, Flexible Collection of SARS-CoV-2 Coding Regions.
JOURNAL G3 (Bethesda). 2020 Aug 6. pii: g3.120.401554. doi:
10.1534/g3.120.401554.
PUBMED 32763951
REFERENCE 2 (bases 1 to 9211)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "G3
(Bethesda). 2020 Aug 6. pii: g3.120.401554. doi:
10.1534/g3.120.401554."
FEATURES Location/Qualifiers
source 1..9211
/organism="synthetic DNA construct"
/mol_type="other DNA"
terminator 56..83
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
terminator 175..261
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
protein_bind 314..413
/gene="mutant version of attL"
/label=attL1
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
protein_bind complement(6255..6354)
/gene="mutant version of attL"
/label=attL2
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
primer_bind complement(6466..6485)
/label=pENTR-R
/note="pENTR vectors, reverse primer"
primer_bind complement(6544..6563)
/label=Kan-R
/note="Kanamycin resistance gene, reverse primer"
CDS complement(7137..7670)
/codon_start=1
/gene="aacC1"
/product="gentamycin acetyltransferase"
/label=GmR
/note="confers resistance to gentamycin"
/translation="MLRSSNDVTQQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAALD
LFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAVVGALAAYVLPKFEQPRS
EIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIR
EEVMHFDIDPSTAT"
promoter complement(7859..7887)
/gene="intI1 (promoter lies within the coding sequence)"
/label=Pc promoter
/note="class 1 integron promoter"
rep_origin 8544..9132
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
primer_bind 9033..9052
/label=pBR322ori-F
/note="pBR322 origin, forward primer"