LOCUS Exported 4088 bp ds-DNA circular SYN 13-JAN-2022
DEFINITION synthetic circular DNA
ACCESSION .
VERSION .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4088)
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4088
/organism="synthetic DNA construct"
/mol_type="other DNA"
CDS 4..30
/codon_start=1
/product="HA (human influenza hemagglutinin) epitope tag"
/note="HA"
/translation="YPYDVPDYA"
polyA_signal 399..533
/note="SV40 poly(A) signal"
/note="SV40 polyadenylation signal"
primer_bind complement(644..660)
/note="M13 rev"
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 668..684
/bound_moiety="lac repressor encoded by lacI"
/note="lac operator"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(692..722)
/note="lac promoter"
/note="promoter for the E. coli lac operon"
protein_bind 737..758
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding site"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1046..1634)
/direction=LEFT
/note="ori"
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(1805..2665)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/note="AmpR"
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(2666..2770)
/gene="bla"
/note="AmpR promoter"
primer_bind 3244..3260
/note="M13 fwd"
/note="common sequencing primer, one of multiple similar
variants"
enhancer 3287..3590
/note="CMV enhancer"
/note="human cytomegalovirus immediate early enhancer"
promoter 3591..3794
/note="CMV promoter"
/note="human cytomegalovirus (CMV) immediate early
promoter"
intron 3932..4028
/note="SV40 intron"
/note="modified SV40 intron with splice donor and acceptor
sites"
LOCUS Exported 4088 bp ds-DNA circular SYN 13-JAN-2022
DEFINITION synthetic circular DNA
ACCESSION .
VERSION .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4088)
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4088
/organism="synthetic DNA construct"
/mol_type="other DNA"
CDS 4..30
/codon_start=1
/product="HA (human influenza hemagglutinin) epitope tag"
/note="HA"
/translation="YPYDVPDYA"
polyA_signal 399..533
/note="SV40 poly(A) signal"
/note="SV40 polyadenylation signal"
primer_bind complement(644..660)
/note="M13 rev"
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 668..684
/bound_moiety="lac repressor encoded by lacI"
/note="lac operator"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(692..722)
/note="lac promoter"
/note="promoter for the E. coli lac operon"
protein_bind 737..758
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding site"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1046..1634)
/direction=LEFT
/note="ori"
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(1805..2665)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/note="AmpR"
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(2666..2770)
/gene="bla"
/note="AmpR promoter"
primer_bind 3244..3260
/note="M13 fwd"
/note="common sequencing primer, one of multiple similar
variants"
enhancer 3287..3590
/note="CMV enhancer"
/note="human cytomegalovirus immediate early enhancer"
promoter 3591..3794
/note="CMV promoter"
/note="human cytomegalovirus (CMV) immediate early
promoter"
intron 3932..4028
/note="SV40 intron"
/note="modified SV40 intron with splice donor and acceptor
sites"