LOCUS Exported 3960 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector pEMBL18- DNA, complete sequence.
ACCESSION LC257595
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3960)
AUTHORS Okamoto S, Niki H.
TITLE NBRP cloning vector collection sequence project
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3960)
AUTHORS Okamoto S, Niki H.
TITLE Direct Submission
JOURNAL Submitted (07-APR-2017) Contact:Sho Okamoto National Institute of
Genetics, Microbial Genetics Laboratory; 1111 Yata, Mishima,
Shizuoka 411-8540, Japan URL
:https://www.nig.ac.jp/labs/MicroGen/index.html
REFERENCE 3 (bases 1 to 3960)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3960
/organism="Cloning vector pEMBL18-"
/mol_type="other DNA"
/db_xref="taxon:1979254"
protein_bind 104..125
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
regulatory 140..170
/regulatory_class="promoter"
/gene="lac promoter"
/note="promoter for the E. coli lac operon"
gene 140..170
/gene="lac promoter"
/label=lac promoter
promoter 140..170
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 178..194
/gene="lac operater"
/label=lac repressor encoded by lacI binding site
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
gene 178..194
/gene="lac operater"
/label=lac operater
primer_bind 202..218
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 214..489
/codon_start=1
/gene="lacZ fragment"
/product="LacZalpha fragment of beta-galactosidase"
/label=lacZ fragment
/protein_id="BAX25483.1"
/translation="MTMITNSSSVPGDPLESTCRHASLALAVVLQRRDWENPGVTQLNR
LAAHPPFASWRNSEEARTDRPSQQLRSLNGEW?FQHPINHTGKAKN"
gene 214..489
/gene="lacZ fragment"
/label=lacZ fragment
misc_feature 228..284
/label=MCS
/note="pUC18/19 multiple cloning site"
primer_bind complement(288..304)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin complement(860..1373)
/direction=LEFT
/label=M13 ori
/note="M13 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
promoter 2052..2156
/gene="bla"
/label=AmpR promoter
CDS 2157..3017
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=bla
/protein_id="BAX25484.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene 2157..3017
/gene="bla"
/label=bla
rep_origin 3188..3776
/direction=RIGHT
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
LOCUS Exported 3960 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector pEMBL18- DNA, complete sequence.
ACCESSION LC257595
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3960)
AUTHORS Okamoto S, Niki H.
TITLE NBRP cloning vector collection sequence project
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3960)
AUTHORS Okamoto S, Niki H.
TITLE Direct Submission
JOURNAL Submitted (07-APR-2017) Contact:Sho Okamoto National Institute of
Genetics, Microbial Genetics Laboratory; 1111 Yata, Mishima,
Shizuoka 411-8540, Japan URL
:https://www.nig.ac.jp/labs/MicroGen/index.html
REFERENCE 3 (bases 1 to 3960)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3960
/organism="Cloning vector pEMBL18-"
/mol_type="other DNA"
/db_xref="taxon:1979254"
protein_bind 104..125
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
regulatory 140..170
/regulatory_class="promoter"
/gene="lac promoter"
/note="promoter for the E. coli lac operon"
gene 140..170
/gene="lac promoter"
/label=lac promoter
promoter 140..170
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 178..194
/gene="lac operater"
/label=lac repressor encoded by lacI binding site
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
gene 178..194
/gene="lac operater"
/label=lac operater
primer_bind 202..218
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 214..489
/codon_start=1
/gene="lacZ fragment"
/product="LacZalpha fragment of beta-galactosidase"
/label=lacZ fragment
/protein_id="BAX25483.1"
/translation="MTMITNSSSVPGDPLESTCRHASLALAVVLQRRDWENPGVTQLNR
LAAHPPFASWRNSEEARTDRPSQQLRSLNGEW?FQHPINHTGKAKN"
gene 214..489
/gene="lacZ fragment"
/label=lacZ fragment
misc_feature 228..284
/label=MCS
/note="pUC18/19 multiple cloning site"
primer_bind complement(288..304)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
rep_origin complement(860..1373)
/direction=LEFT
/label=M13 ori
/note="M13 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
promoter 2052..2156
/gene="bla"
/label=AmpR promoter
CDS 2157..3017
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=bla
/protein_id="BAX25484.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene 2157..3017
/gene="bla"
/label=bla
rep_origin 3188..3776
/direction=RIGHT
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"