LOCUS Exported 3666 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pDM131, complete sequence.
ACCESSION EU912545
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3666)
AUTHORS Veltman DM, Akar G, Bosgraaf L, Van Haastert PJ.
TITLE A new set of small, extrachromosomal expression vectors for
Dictyostelium discoideum
JOURNAL Plasmid 61 (2), 110-118 (2009)
PUBMED 19063918
REFERENCE 2 (bases 1 to 3666)
AUTHORS Veltman DM, Akar G, Bosgraaf L, van Haastert PJM.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2008) Cell Biochemistry, Rijks Universiteit
Groningen, Kerklaan 30, Haren 9751 NN, The Netherlands
REFERENCE 3 (bases 1 to 3666)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3666
/organism="Cloning vector pDM131"
/mol_type="other DNA"
/label=mRFPmars-tag for N-terminal fusion
/note="mRFPmars-tag for N-terminal fusion"
/db_xref="taxon:555766"
CDS 12..686
/codon_start=1
/product="monomeric red fluorescent protein mars"
/label=monomeric red fluorescent protein mars
/protein_id="ACH81570.1"
/translation="MASSEDVIKEFMRFKVKMEGSVNGHEFEIEGEGEGRPYEGTQTAK
LKVTKGGPLPFAWDILSPQFQYGSKAYVKHPADIPDYLKLSFPEGFKWERIMNFEDGGV
VTVTQDSTLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASTERMYPEDGALKGEIKM
RLKLKDGGHYDAEVKTTYKAKKQVQLPGAYKTDIKLDIISHNEDYTIVEQYERAEGRHS
TGA"
primer_bind complement(726..742)
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
promoter complement(779..797)
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
primer_bind complement(818..834)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 842..858
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(866..896)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 911..932
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1164..1831)
/direction=LEFT
/label=pUC ori
/note="pUC ori"
rep_origin complement(1220..1808)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(1979..2839)
/codon_start=1
/product="penicillin beta-lactamase"
/label=penicillin beta-lactamase
/protein_id="ACH81571.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(2840..2944)
/gene="bla"
/label=AmpR promoter
rep_origin 2971..3426
/direction=RIGHT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
primer_bind 3567..3583
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 3593..3611
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind 3637..3653
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"
LOCUS Exported 3666 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector pDM131, complete sequence.
ACCESSION EU912545
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 3666)
AUTHORS Veltman DM, Akar G, Bosgraaf L, Van Haastert PJ.
TITLE A new set of small, extrachromosomal expression vectors for
Dictyostelium discoideum
JOURNAL Plasmid 61 (2), 110-118 (2009)
PUBMED 19063918
REFERENCE 2 (bases 1 to 3666)
AUTHORS Veltman DM, Akar G, Bosgraaf L, van Haastert PJM.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2008) Cell Biochemistry, Rijks Universiteit
Groningen, Kerklaan 30, Haren 9751 NN, The Netherlands
REFERENCE 3 (bases 1 to 3666)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..3666
/organism="Cloning vector pDM131"
/mol_type="other DNA"
/label=mRFPmars-tag for N-terminal fusion
/note="mRFPmars-tag for N-terminal fusion"
/db_xref="taxon:555766"
CDS 12..686
/codon_start=1
/product="monomeric red fluorescent protein mars"
/label=monomeric red fluorescent protein mars
/protein_id="ACH81570.1"
/translation="MASSEDVIKEFMRFKVKMEGSVNGHEFEIEGEGEGRPYEGTQTAK
LKVTKGGPLPFAWDILSPQFQYGSKAYVKHPADIPDYLKLSFPEGFKWERIMNFEDGGV
VTVTQDSTLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASTERMYPEDGALKGEIKM
RLKLKDGGHYDAEVKTTYKAKKQVQLPGAYKTDIKLDIISHNEDYTIVEQYERAEGRHS
TGA"
primer_bind complement(726..742)
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
promoter complement(779..797)
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
primer_bind complement(818..834)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 842..858
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(866..896)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 911..932
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(1164..1831)
/direction=LEFT
/label=pUC ori
/note="pUC ori"
rep_origin complement(1220..1808)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(1979..2839)
/codon_start=1
/product="penicillin beta-lactamase"
/label=penicillin beta-lactamase
/protein_id="ACH81571.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(2840..2944)
/gene="bla"
/label=AmpR promoter
rep_origin 2971..3426
/direction=RIGHT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
primer_bind 3567..3583
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 3593..3611
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind 3637..3653
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"