LOCUS Exported 7474 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION UNVERIFIED: Cloning vector pDhtSK, complete sequence.
ACCESSION MG869095
VERSION .
KEYWORDS UNVERIFIED.
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7474)
AUTHORS Feng J.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2018) Sun Yat-sen Memorial Hospital, Sun Yat-sen
University, Department of Dermatology, 107 West Yanjiang Rd,
Guangzhou, Guangdong 510120, China
REFERENCE 2 (bases 1 to 7474)
AUTHORS .
TITLE Direct Submission
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7474
/organism="Cloning vector pDhtSK"
/mol_type="other DNA"
/db_xref="taxon:2485481"
polyA_signal 77..251
/label=CaMV poly(A) signal
/note="cauliflower mosaic virus polyadenylation signal"
protein_bind 552..573
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 588..618
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 626..642
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 650..666
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 662..1027
/codon_start=1
/gene="lacZ fragment"
/product="LacZ-alpha fragment of beta-galactosidase"
/label=lacZ-alpha
/translation="MTMITPSAQLTLTKGNKSWSSTAVAAALELVDPPGCRNSISSLSI
PSTSRGGPVPNSPYSESYYARSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEAR
TDRPSQQLRSLNGEWKL"
promoter 687..705
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
misc_feature 718..825
/label=MCS
/note="pBluescript multiple cloning site"
primer_bind 742..758
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
primer_bind complement(792..808)
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"
promoter complement(834..852)
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind complement(862..878)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
misc_feature 1171..1195
/label=RB T-DNA repeat
/note="right border repeat from nopaline C58 T-DNA"
CDS 2495..3124
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"
CDS 3558..4625
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
rep_origin 4691..4885
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
misc_feature 5229..5369
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(5555..6143)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(6230..7024)
/codon_start=1
/gene="aphA-3"
/product="aminoglycoside phosphotransferase"
/label=KanR
/note="confers resistance to kanamycin"
/translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKM
TDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED
EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT
PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIA
FCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
misc_feature 7449..7473
/label=LB T-DNA repeat
/note="left border repeat from nopaline C58 T-DNA"
LOCUS Exported 7474 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION UNVERIFIED: Cloning vector pDhtSK, complete sequence.
ACCESSION MG869095
VERSION .
KEYWORDS UNVERIFIED.
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7474)
AUTHORS Feng J.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2018) Sun Yat-sen Memorial Hospital, Sun Yat-sen
University, Department of Dermatology, 107 West Yanjiang Rd,
Guangzhou, Guangdong 510120, China
REFERENCE 2 (bases 1 to 7474)
AUTHORS .
TITLE Direct Submission
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7474
/organism="Cloning vector pDhtSK"
/mol_type="other DNA"
/db_xref="taxon:2485481"
polyA_signal 77..251
/label=CaMV poly(A) signal
/note="cauliflower mosaic virus polyadenylation signal"
protein_bind 552..573
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 588..618
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 626..642
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 650..666
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
CDS 662..1027
/codon_start=1
/gene="lacZ fragment"
/product="LacZ-alpha fragment of beta-galactosidase"
/label=lacZ-alpha
/translation="MTMITPSAQLTLTKGNKSWSSTAVAAALELVDPPGCRNSISSLSI
PSTSRGGPVPNSPYSESYYARSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEAR
TDRPSQQLRSLNGEWKL"
promoter 687..705
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
misc_feature 718..825
/label=MCS
/note="pBluescript multiple cloning site"
primer_bind 742..758
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
primer_bind complement(792..808)
/label=KS primer
/note="common sequencing primer, one of multiple similar
variants"
promoter complement(834..852)
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
primer_bind complement(862..878)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
misc_feature 1171..1195
/label=RB T-DNA repeat
/note="right border repeat from nopaline C58 T-DNA"
CDS 2495..3124
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"
CDS 3558..4625
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
rep_origin 4691..4885
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
misc_feature 5229..5369
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(5555..6143)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(6230..7024)
/codon_start=1
/gene="aphA-3"
/product="aminoglycoside phosphotransferase"
/label=KanR
/note="confers resistance to kanamycin"
/translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKM
TDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED
EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT
PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIA
FCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
misc_feature 7449..7473
/label=LB T-DNA repeat
/note="left border repeat from nopaline C58 T-DNA"