LOCUS Exported 10016 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Plant binary expression vector pCR3300, complete sequence.
ACCESSION KF206150
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 10016)
AUTHORS Li JT, Yu G, Sun XH, Jia CG, Du Q, Li QY, Pan HY.
TITLE Modification of vectors for functional genomic analysis in plants
JOURNAL Genet. Mol. Res. 13 (3), 7815-7825 (2014)
PUBMED 25299096
REFERENCE 2 (bases 1 to 10016)
AUTHORS Yu G, Li J, Sun X, Pan H.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2013) Plant Pathology, College of Plant Science,
Jilin University, Xian Road 5333, Changchun, Jilin 130062, China
REFERENCE 3 (bases 1 to 10016)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Assembly Method :: Lasergene v. 7.1
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..10016
/organism="Plant binary expression vector pCR3300"
/mol_type="other DNA"
/db_xref="taxon:1403401"
CDS 1219..1848
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"
CDS 2282..3349
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
rep_origin 3415..3609
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
misc_feature 3953..4093
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(4279..4867)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(4954..5748)
/codon_start=1
/product="aminoglycoside 3-phosphotransferase"
/label=aminoglycoside 3-phosphotransferase
/note="KanA"
/protein_id="AGX13950.1"
/translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKM
TDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED
EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT
PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIA
FCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
misc_feature 6173..6197
/label=LB T-DNA repeat
/note="left border repeat from nopaline C58 T-DNA"
polyA_signal 6275..6449
/label=CaMV poly(A) signal
/note="cauliflower mosaic virus polyadenylation signal"
CDS complement(6456..7007)
/codon_start=1
/product="phosphinothricin N-acetyltransferase"
/label=phosphinothricin N-acetyltransferase
/note="PPT(bar)"
/protein_id="AGX13951.1"
/translation="MSPERRPADIRRATEADMPAVCTIVNHYIETSTVNFRTEPQEPQE
WTDDLVRLRERYPWLVAEVDGEVAGIAYAGPWKARNAYDWTAESTVYVSPRHQRTGLGS
TLYTHLLKSLEAQGFKSVVAVIGLPNDPSVRMHEALGYAPRGMLRAAGFKHGNWHDVGF
WQLDFSLPVPPRPVLPVTEI"
regulatory complement(7019..7799)
/regulatory_class="promoter"
/gene="CaMV35S"
gene complement(7019..7799)
/gene="CaMV35S"
/label=CaMV35S
promoter complement(7052..7729)
/label=CaMV 35S promoter (enhanced)
/note="cauliflower mosaic virus 35S promoter with a
duplicated enhancer region"
protein_bind 7920..7941
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 7956..7986
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 7994..8010
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 8018..8034
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
regulatory 8049..8897
/regulatory_class="promoter"
/gene="rd29A"
gene 8049..8897
/gene="rd29A"
/label=rd29A
regulatory 9037..9581
/regulatory_class="terminator"
terminator 9038..9679
/label=E9 terminator
/note="terminator and polyadenylation signal from the pea
rbcS-E9 gene"
primer_bind complement(9692..9708)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
misc_feature 9911..9935
/label=RB T-DNA repeat
/note="right border repeat from nopaline C58 T-DNA"
LOCUS Exported 10016 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Plant binary expression vector pCR3300, complete sequence.
ACCESSION KF206150
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 10016)
AUTHORS Li JT, Yu G, Sun XH, Jia CG, Du Q, Li QY, Pan HY.
TITLE Modification of vectors for functional genomic analysis in plants
JOURNAL Genet. Mol. Res. 13 (3), 7815-7825 (2014)
PUBMED 25299096
REFERENCE 2 (bases 1 to 10016)
AUTHORS Yu G, Li J, Sun X, Pan H.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2013) Plant Pathology, College of Plant Science,
Jilin University, Xian Road 5333, Changchun, Jilin 130062, China
REFERENCE 3 (bases 1 to 10016)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Assembly Method :: Lasergene v. 7.1
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..10016
/organism="Plant binary expression vector pCR3300"
/mol_type="other DNA"
/db_xref="taxon:1403401"
CDS 1219..1848
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"
CDS 2282..3349
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
rep_origin 3415..3609
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
misc_feature 3953..4093
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(4279..4867)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(4954..5748)
/codon_start=1
/product="aminoglycoside 3-phosphotransferase"
/label=aminoglycoside 3-phosphotransferase
/note="KanA"
/protein_id="AGX13950.1"
/translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKM
TDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED
EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT
PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIA
FCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
misc_feature 6173..6197
/label=LB T-DNA repeat
/note="left border repeat from nopaline C58 T-DNA"
polyA_signal 6275..6449
/label=CaMV poly(A) signal
/note="cauliflower mosaic virus polyadenylation signal"
CDS complement(6456..7007)
/codon_start=1
/product="phosphinothricin N-acetyltransferase"
/label=phosphinothricin N-acetyltransferase
/note="PPT(bar)"
/protein_id="AGX13951.1"
/translation="MSPERRPADIRRATEADMPAVCTIVNHYIETSTVNFRTEPQEPQE
WTDDLVRLRERYPWLVAEVDGEVAGIAYAGPWKARNAYDWTAESTVYVSPRHQRTGLGS
TLYTHLLKSLEAQGFKSVVAVIGLPNDPSVRMHEALGYAPRGMLRAAGFKHGNWHDVGF
WQLDFSLPVPPRPVLPVTEI"
regulatory complement(7019..7799)
/regulatory_class="promoter"
/gene="CaMV35S"
gene complement(7019..7799)
/gene="CaMV35S"
/label=CaMV35S
promoter complement(7052..7729)
/label=CaMV 35S promoter (enhanced)
/note="cauliflower mosaic virus 35S promoter with a
duplicated enhancer region"
protein_bind 7920..7941
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 7956..7986
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 7994..8010
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 8018..8034
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
regulatory 8049..8897
/regulatory_class="promoter"
/gene="rd29A"
gene 8049..8897
/gene="rd29A"
/label=rd29A
regulatory 9037..9581
/regulatory_class="terminator"
terminator 9038..9679
/label=E9 terminator
/note="terminator and polyadenylation signal from the pea
rbcS-E9 gene"
primer_bind complement(9692..9708)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
misc_feature 9911..9935
/label=RB T-DNA repeat
/note="right border repeat from nopaline C58 T-DNA"