LOCUS       Exported                6303 bp ds-DNA     circular SYN 17-DEC-2018
DEFINITION  Allelic exchange vector pCM351, complete sequence.
ACCESSION   AY093430
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 6303)
  AUTHORS   Marx CJ, Lidstrom ME.
  TITLE     A broad-host-range cre-lox system for antibiotic marker recycling in
            Gram-negative bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6303)
  AUTHORS   Marx CJ, Lidstrom ME.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2002) Chemical Engineering, University of 
            Washington, Box 351750, Seattle, WA 98195-1750, USA
REFERENCE   3  (bases 1 to 6303)
  AUTHORS   .
  TITLE     Direct Submission
FEATURES             Location/Qualifiers
     source          1..6303
                     /organism="Allelic exchange vector pCM351"
                     /mol_type="other DNA"
                     /db_xref="taxon:192854"
     CDS             complement(1..861)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=bla
                     /note="ampicillin resistance"
                     /protein_id="AAM19721.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     gene            complement(1..861)
                     /gene="bla"
                     /label=bla
     promoter        complement(862..966)
                     /gene="bla"
                     /label=AmpR promoter
     protein_bind    1050..1083
                     /label=loxP binding site
                     /bound_moiety="loxP"
                     /note="Cre recombinase recognition site"
     promoter        1092..1120
                     /gene="intI1 (promoter lies within the coding sequence)"
                     /label=Pc promoter
                     /note="class 1 integron promoter"
     CDS             1309..1842
                     /codon_start=1
                     /gene="aaaC1"
                     /product="gentamycin acetyltransferase"
                     /label=aaaC1
                     /note="gentamycin resistance"
                     /protein_id="AAM19722.1"
                     /translation="MLRSSNDVTQQGSRPKTKLGGSSMGIIRTCRLGPDQVKSMRAALD
                     LFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQEAVVGALAAYVLPRFEQPRS
                     EIYIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIR
                     EEVMHFDIDPSTAT"
     gene            1309..1842
                     /gene="aaaC1"
                     /label=aaaC1
     protein_bind    1886..1919
                     /label=loxP binding site
                     /bound_moiety="loxP"
                     /note="Cre recombinase recognition site"
     oriT            2484..3222
                     /label=IncP origin of transfer
                     /note="IncP origin of transfer"
     CDS             complement(2574..2945)
                     /codon_start=1
                     /gene="traJ"
                     /product="oriT-recognizing protein"
                     /label=traJ
                     /translation="MADETKPTRKGSPPIKVYCLPDERRAIEEKAAAAGMSLSAYLLAV
                     GQGYKITGVVDYEHVRELARINGDLGRLGGLLKLWLTDDPRTARFGDATILALLAKIEE
                     KQDELGKVMMGVVRPRAEP"
     oriT            2978..3087
                     /note="incP origin of transfer"
     promoter        3724..3752
                     /label=tet promoter
                     /note="E. coli promoter for tetracycline efflux protein 
                     gene"
     CDS             3800..4990
                     /codon_start=1
                     /gene="tet"
                     /product="tetracyline resistance"
                     /label=tet
                     /protein_id="AAM19723.1"
                     /translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHY
                     GVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRI
                     VAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPF
                     LAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIM
                     QLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAII
                     AGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSL
                     AALTSLTSITGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST"
     gene            3800..4990
                     /gene="tet"
                     /label=tet
     rep_origin      complement(5503..6058)
                     /direction=LEFT
                     /note="ColE1 ori; ColE1 origin of replication"
     rep_origin      complement(5545..6133)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"