LOCUS Exported 4955 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector pCDF-RpALS, complete sequence.
ACCESSION MH488925
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4955)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 4955)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 4955)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4955
/organism="Cloning vector pCDF-RpALS"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301142"
protein_bind 3..27
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 71..1246
/codon_start=1
/gene="ALS"
/product="aloesone synthase"
/label=ALS
/note="derived from Rheum palmatum"
/protein_id="AXN70001.1"
/translation="MADVLQEIRNSQKASGPATVLAIGTAHPPTCYPQADYPDFYFRVC
KSEHMTKLKKKMQFICDRSGIRQRFMFHTEENLGKNPGMCTFDGPSLNARQDMLIMEVP
KLGAEAAEKAIKEWGQDKSRITHLIFCTTTSNDMPGADYQFATLFGLNPGVSRTMVYQQ
GCFAGGTVLRLVKDIAENNKGARVLVVCSEIVAFAFRGPHEDHIDSLIGQLLFGDGAAA
LVVGTDIDESVERPIFQIMSATQATIPNSLHTMALHLTEAGLTFHLSKEVPKVVSDNME
ELMLEAFKPLGITDWNSIFWQVHPGGRAILDKIEEKLELTKDKMRDSRYILSEYGNLTS
ACVLFVMDEMRKRSFREGKQTTGDGYEWGVAIGLGPGLTVETVVLRSVPIP"
gene 71..1246
/gene="ALS"
/label=ALS
CDS 1257..1274
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
promoter 1388..1406
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
protein_bind 1407..1431
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 1540..1584
/codon_start=1
/product="affinity and epitope tag derived from pancreatic
ribonuclease A"
/label=S-Tag
/translation="KETAAAKFERQHMDS"
terminator 1636..1683
/label=T7 terminator
/note="transcription terminator for bacteriophage T7 RNA
polymerase"
regulatory 1637..1683
/regulatory_class="terminator"
/note="T7 terminator"
CDS complement(1854..2645)
/codon_start=1
/product="spectinomycin resistance protein"
/label=spectinomycin resistance protein
/protein_id="AXN70002.1"
/translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
promoter complement(2646..2737)
/gene="bla"
/label=AmpR promoter
rep_origin complement(2785..3523)
/direction=LEFT
/label=CDF
/note="CDF"
CDS complement(3733..4815)
/codon_start=1
/gene="lacIq"
/product="lac repressor protein"
/label=lacIq
/protein_id="AXN70003.1"
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
gene complement(3733..4815)
/gene="lacIq"
/label=lacIq
promoter complement(4816..4893)
/gene="lacI"
/label=lacI promoter
promoter 4939..2
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
regulatory 4939..4955
/regulatory_class="promoter"
/note="T7 promoter"
LOCUS Exported 4955 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector pCDF-RpALS, complete sequence.
ACCESSION MH488925
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4955)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 4955)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 4955)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4955
/organism="Cloning vector pCDF-RpALS"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301142"
protein_bind 3..27
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 71..1246
/codon_start=1
/gene="ALS"
/product="aloesone synthase"
/label=ALS
/note="derived from Rheum palmatum"
/protein_id="AXN70001.1"
/translation="MADVLQEIRNSQKASGPATVLAIGTAHPPTCYPQADYPDFYFRVC
KSEHMTKLKKKMQFICDRSGIRQRFMFHTEENLGKNPGMCTFDGPSLNARQDMLIMEVP
KLGAEAAEKAIKEWGQDKSRITHLIFCTTTSNDMPGADYQFATLFGLNPGVSRTMVYQQ
GCFAGGTVLRLVKDIAENNKGARVLVVCSEIVAFAFRGPHEDHIDSLIGQLLFGDGAAA
LVVGTDIDESVERPIFQIMSATQATIPNSLHTMALHLTEAGLTFHLSKEVPKVVSDNME
ELMLEAFKPLGITDWNSIFWQVHPGGRAILDKIEEKLELTKDKMRDSRYILSEYGNLTS
ACVLFVMDEMRKRSFREGKQTTGDGYEWGVAIGLGPGLTVETVVLRSVPIP"
gene 71..1246
/gene="ALS"
/label=ALS
CDS 1257..1274
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
promoter 1388..1406
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
protein_bind 1407..1431
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 1540..1584
/codon_start=1
/product="affinity and epitope tag derived from pancreatic
ribonuclease A"
/label=S-Tag
/translation="KETAAAKFERQHMDS"
terminator 1636..1683
/label=T7 terminator
/note="transcription terminator for bacteriophage T7 RNA
polymerase"
regulatory 1637..1683
/regulatory_class="terminator"
/note="T7 terminator"
CDS complement(1854..2645)
/codon_start=1
/product="spectinomycin resistance protein"
/label=spectinomycin resistance protein
/protein_id="AXN70002.1"
/translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
promoter complement(2646..2737)
/gene="bla"
/label=AmpR promoter
rep_origin complement(2785..3523)
/direction=LEFT
/label=CDF
/note="CDF"
CDS complement(3733..4815)
/codon_start=1
/gene="lacIq"
/product="lac repressor protein"
/label=lacIq
/protein_id="AXN70003.1"
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
gene complement(3733..4815)
/gene="lacIq"
/label=lacIq
promoter complement(4816..4893)
/gene="lacI"
/label=lacI promoter
promoter 4939..2
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
regulatory 4939..4955
/regulatory_class="promoter"
/note="T7 promoter"