LOCUS Exported 4991 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector pCDF-AaPKS3, complete sequence.
ACCESSION MH488926
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4991)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 4991)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 4991)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4991
/organism="Cloning vector pCDF-AaPKS3"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301141"
protein_bind 3..27
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 71..1282
/codon_start=1
/gene="PKS3"
/product="aloesone synthase"
/label=PKS3
/note="derived from Aloe arborescens"
/protein_id="AXN70004.1"
/translation="MGSLSDSTPLMKDVQGIRKAQKADGTATVMAIGTAHPPHIISQDS
YADFYFRVTNSEHKVELKKKFDRICKKTMIGKRYFNFDEEFLKKYPNITSFDKPSLNDR
HDICIPGVPALGAEAAVKAIEEWGRPKSEITHLVFCTSGGVDMPSADFQCAKLLGLRTN
VNKYCIYMQGCYAGGTVMRYAKDLAENNRGARVLMVCAELTIIALRGPNDSHIDNAIGN
SLFGDGAAALIVGSDPIIGVEKPMFEIVCAKQTVIPNSEEVIHLHLRESGLMFYMTKDS
AATISNNIEACLVDVFKSVGMTPPEDWNSLFWIPHPGGRAILDQVEAKLKLRPEKFSAT
RTVLWDYGNMISACVLYILDEMRRKSAAEGLETYGEGLEWGVLLGFGPGMTIETILLHS
LPPV"
gene 71..1282
/gene="PKS3"
/label=PKS3
CDS 1293..1310
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
promoter 1424..1442
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
protein_bind 1443..1467
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 1576..1620
/codon_start=1
/product="affinity and epitope tag derived from pancreatic
ribonuclease A"
/label=S-Tag
/translation="KETAAAKFERQHMDS"
terminator 1672..1719
/label=T7 terminator
/note="transcription terminator for bacteriophage T7 RNA
polymerase"
regulatory 1673..1719
/regulatory_class="terminator"
/note="T7 terminator"
CDS complement(1890..2681)
/codon_start=1
/product="spectinomycin resistance protein"
/label=spectinomycin resistance protein
/protein_id="AXN70005.1"
/translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
promoter complement(2682..2773)
/gene="bla"
/label=AmpR promoter
rep_origin complement(2821..3559)
/direction=LEFT
/label=CDF
/note="CDF"
CDS complement(3769..4851)
/codon_start=1
/gene="lacIq"
/product="lac repressor protein"
/label=lacIq
/protein_id="AXN70006.1"
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
gene complement(3769..4851)
/gene="lacIq"
/label=lacIq
promoter complement(4852..4929)
/gene="lacI"
/label=lacI promoter
promoter 4975..2
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
regulatory 4975..4991
/regulatory_class="promoter"
/note="T7 promoter"
LOCUS Exported 4991 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector pCDF-AaPKS3, complete sequence.
ACCESSION MH488926
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4991)
AUTHORS Kim B, Binkley R, Kim HU, Lee SY.
TITLE Metabolic engineering of Escherichia coli for the enhanced
production of l-tyrosine
JOURNAL Biotechnol. Bioeng. (2018) In press
PUBMED 30019750
REFERENCE 2 (bases 1 to 4991)
AUTHORS Yang D, Kim WJ, Yoo SM, Choi JH, Ha SH, Lee MH, Lee SY.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2018) Dept. Chemical and Biomolecular Engineering,
Korea Advanced Institute of Science and Technology, Daehak-ro 291,
Daejeon 34141, South Korea
REFERENCE 3 (bases 1 to 4991)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..4991
/organism="Cloning vector pCDF-AaPKS3"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2301141"
protein_bind 3..27
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 71..1282
/codon_start=1
/gene="PKS3"
/product="aloesone synthase"
/label=PKS3
/note="derived from Aloe arborescens"
/protein_id="AXN70004.1"
/translation="MGSLSDSTPLMKDVQGIRKAQKADGTATVMAIGTAHPPHIISQDS
YADFYFRVTNSEHKVELKKKFDRICKKTMIGKRYFNFDEEFLKKYPNITSFDKPSLNDR
HDICIPGVPALGAEAAVKAIEEWGRPKSEITHLVFCTSGGVDMPSADFQCAKLLGLRTN
VNKYCIYMQGCYAGGTVMRYAKDLAENNRGARVLMVCAELTIIALRGPNDSHIDNAIGN
SLFGDGAAALIVGSDPIIGVEKPMFEIVCAKQTVIPNSEEVIHLHLRESGLMFYMTKDS
AATISNNIEACLVDVFKSVGMTPPEDWNSLFWIPHPGGRAILDQVEAKLKLRPEKFSAT
RTVLWDYGNMISACVLYILDEMRRKSAAEGLETYGEGLEWGVLLGFGPGMTIETILLHS
LPPV"
gene 71..1282
/gene="PKS3"
/label=PKS3
CDS 1293..1310
/codon_start=1
/product="6xHis affinity tag"
/label=6xHis
/translation="HHHHHH"
promoter 1424..1442
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
protein_bind 1443..1467
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 1576..1620
/codon_start=1
/product="affinity and epitope tag derived from pancreatic
ribonuclease A"
/label=S-Tag
/translation="KETAAAKFERQHMDS"
terminator 1672..1719
/label=T7 terminator
/note="transcription terminator for bacteriophage T7 RNA
polymerase"
regulatory 1673..1719
/regulatory_class="terminator"
/note="T7 terminator"
CDS complement(1890..2681)
/codon_start=1
/product="spectinomycin resistance protein"
/label=spectinomycin resistance protein
/protein_id="AXN70005.1"
/translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
promoter complement(2682..2773)
/gene="bla"
/label=AmpR promoter
rep_origin complement(2821..3559)
/direction=LEFT
/label=CDF
/note="CDF"
CDS complement(3769..4851)
/codon_start=1
/gene="lacIq"
/product="lac repressor protein"
/label=lacIq
/protein_id="AXN70006.1"
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
gene complement(3769..4851)
/gene="lacIq"
/label=lacIq
promoter complement(4852..4929)
/gene="lacI"
/label=lacI promoter
promoter 4975..2
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
regulatory 4975..4991
/regulatory_class="promoter"
/note="T7 promoter"