Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa T, Mano S.
pB4GWnR 载体载体图谱
pB4GWnR 载体载体序列
LOCUS Exported 12186 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Gateway vector pB4GWnR DNA, complete sequence.
ACCESSION AB830558
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 12186)
AUTHORS Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa
T, Mano S.
TITLE Gateway Vectors for Simultaneous Detection of Multiple
Protein-Protein Interactions in Plant Cells Using Bimolecular
Fluorescence Complementation
JOURNAL PLoS ONE 11 (8), E0160717 (2016)
PUBMED 27490375
REFERENCE 2 (bases 1 to 12186)
AUTHORS Mano S, Nakagawa T.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2013) Contact:Shoji Mano National Institute for
Basic Biology, Department of Cell Biology; 38 Nishigonaka, Myodaiji,
Okazaki, Aichi 444-8585, Japan
REFERENCE 3 (bases 1 to 12186)
AUTHORS .
TITLE Direct Submission
COMMENT These colnes were obtained at our laboratory.
FEATURES Location/Qualifiers
source 1..12186
/organism="Gateway vector pB4GWnR"
/mol_type="other DNA"
/db_xref="taxon:1356431"
misc_feature 114..138
/label=T-DNA right border
/note="T-DNA right border"
primer_bind 341..357
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 385..1219
/regulatory_class="promoter"
/note="35S promoter"
promoter 872..1217
/label=CaMV 35S promoter
/note="strong constitutive promoter from cauliflower mosaic
virus"
misc_feature complement(1239..1363)
/label=attR1
/note="attR1"
protein_bind 1239..1363
/gene="mutant version of attR"
/label=attR1
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
promoter 1400..1430
/label=lac UV5 promoter
/note="E. coli lac promoter with an ""up"" mutation"
CDS 1484..2143
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=cat
/protein_id="BAV44523.1"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
gene 1484..2143
/gene="cat"
/label=cat
CDS 2485..2790
/codon_start=1
/gene="ccdB"
/label=ccdB
/protein_id="BAV44524.1"
/translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK
VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI"
gene 2485..2790
/gene="ccdB"
/label=ccdB
misc_feature 2831..2955
/label=attR2
/note="attR2"
protein_bind complement(2831..2955)
/gene="mutant version of attR"
/label=attR2
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
CDS 2966..3463
/codon_start=1
/product="amino-terminal fragment of monomeric red
fluorescent protein 1"
/label=amino-terminal fragment of monomeric red fluore
/note="nmrfp1"
/protein_id="BAV44525.1"
/translation="MEQKLISEEDLMASSEDVIKEFMRFKVRMEGSVNGHEFEIEGEGE
GRPYEGTQTAKLKVTKGGPLPFAWDILSPQFTYGSKAYVKHPADIPDYLKLSFPEGFKW
ERVMNFEDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASTERMYP
ED"
CDS 2969..2998
/codon_start=1
/product="Myc (human c-Myc proto-oncogene) epitope tag"
/label=Myc
/translation="EQKLISEEDL"
regulatory 3469..3878
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3485..3737
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(3771..3787)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3795..3811
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3819..3849)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3864..3885
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
regulatory complement(3912..4171)
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3919..4171
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
CDS complement(4561..5355)
/codon_start=1
/gene="nptII"
/product="neomycin phosphotransferase II"
/label=nptII
/protein_id="BAV44526.1"
/translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP
VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS
SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ
GLAPAELFARLKARMPDGDDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA
LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF"
gene complement(4561..5355)
/gene="nptII"
/label=nptII
regulatory complement(5368..5674)
/regulatory_class="promoter"
/note="NOS promoter"
promoter complement(5376..5559)
/function="NOS promoter"
/label=NOS promoter
/note="nopaline synthase promoter"
promoter complement(5412..5591)
/label=NOS promoter
/note="nopaline synthase promoter"
misc_feature 5765..5789
/label=T-DNA left border
/note="T-DNA left border"
CDS 6317..7108
/codon_start=1
/gene="aadA"
/product="aminoglycoside adenylyltransferase (Murphy,
1985)"
/label=SmR
/note="confers resistance to spectinomycin and
streptomycin"
/translation="MGEAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
rep_origin 7352..7940
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
misc_feature 8126..8266
/label=bom
/note="basis of mobility region from pBR322"
rep_origin 8610..8804
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
CDS complement(8870..9937)
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
CDS complement(10371..11000)
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"
Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa T, Mano S.
pB4GWnR 载体载体图谱
pB4GWnR 载体载体序列
LOCUS Exported 12186 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Gateway vector pB4GWnR DNA, complete sequence.
ACCESSION AB830558
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 12186)
AUTHORS Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa
T, Mano S.
TITLE Gateway Vectors for Simultaneous Detection of Multiple
Protein-Protein Interactions in Plant Cells Using Bimolecular
Fluorescence Complementation
JOURNAL PLoS ONE 11 (8), E0160717 (2016)
PUBMED 27490375
REFERENCE 2 (bases 1 to 12186)
AUTHORS Mano S, Nakagawa T.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2013) Contact:Shoji Mano National Institute for
Basic Biology, Department of Cell Biology; 38 Nishigonaka, Myodaiji,
Okazaki, Aichi 444-8585, Japan
REFERENCE 3 (bases 1 to 12186)
AUTHORS .
TITLE Direct Submission
COMMENT These colnes were obtained at our laboratory.
FEATURES Location/Qualifiers
source 1..12186
/organism="Gateway vector pB4GWnR"
/mol_type="other DNA"
/db_xref="taxon:1356431"
misc_feature 114..138
/label=T-DNA right border
/note="T-DNA right border"
primer_bind 341..357
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 385..1219
/regulatory_class="promoter"
/note="35S promoter"
promoter 872..1217
/label=CaMV 35S promoter
/note="strong constitutive promoter from cauliflower mosaic
virus"
misc_feature complement(1239..1363)
/label=attR1
/note="attR1"
protein_bind 1239..1363
/gene="mutant version of attR"
/label=attR1
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
promoter 1400..1430
/label=lac UV5 promoter
/note="E. coli lac promoter with an ""up"" mutation"
CDS 1484..2143
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=cat
/protein_id="BAV44523.1"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
gene 1484..2143
/gene="cat"
/label=cat
CDS 2485..2790
/codon_start=1
/gene="ccdB"
/label=ccdB
/protein_id="BAV44524.1"
/translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK
VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI"
gene 2485..2790
/gene="ccdB"
/label=ccdB
misc_feature 2831..2955
/label=attR2
/note="attR2"
protein_bind complement(2831..2955)
/gene="mutant version of attR"
/label=attR2
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
CDS 2966..3463
/codon_start=1
/product="amino-terminal fragment of monomeric red
fluorescent protein 1"
/label=amino-terminal fragment of monomeric red fluore
/note="nmrfp1"
/protein_id="BAV44525.1"
/translation="MEQKLISEEDLMASSEDVIKEFMRFKVRMEGSVNGHEFEIEGEGE
GRPYEGTQTAKLKVTKGGPLPFAWDILSPQFTYGSKAYVKHPADIPDYLKLSFPEGFKW
ERVMNFEDGGVVTVTQDSSLQDGEFIYKVKLRGTNFPSDGPVMQKKTMGWEASTERMYP
ED"
CDS 2969..2998
/codon_start=1
/product="Myc (human c-Myc proto-oncogene) epitope tag"
/label=Myc
/translation="EQKLISEEDL"
regulatory 3469..3878
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3485..3737
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(3771..3787)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3795..3811
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3819..3849)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3864..3885
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
regulatory complement(3912..4171)
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3919..4171
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
CDS complement(4561..5355)
/codon_start=1
/gene="nptII"
/product="neomycin phosphotransferase II"
/label=nptII
/protein_id="BAV44526.1"
/translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP
VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS
SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ
GLAPAELFARLKARMPDGDDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA
LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF"
gene complement(4561..5355)
/gene="nptII"
/label=nptII
regulatory complement(5368..5674)
/regulatory_class="promoter"
/note="NOS promoter"
promoter complement(5376..5559)
/function="NOS promoter"
/label=NOS promoter
/note="nopaline synthase promoter"
promoter complement(5412..5591)
/label=NOS promoter
/note="nopaline synthase promoter"
misc_feature 5765..5789
/label=T-DNA left border
/note="T-DNA left border"
CDS 6317..7108
/codon_start=1
/gene="aadA"
/product="aminoglycoside adenylyltransferase (Murphy,
1985)"
/label=SmR
/note="confers resistance to spectinomycin and
streptomycin"
/translation="MGEAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
rep_origin 7352..7940
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
misc_feature 8126..8266
/label=bom
/note="basis of mobility region from pBR322"
rep_origin 8610..8804
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
CDS complement(8870..9937)
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
CDS complement(10371..11000)
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"