Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa T, Mano S.
pB4cCGGW 载体载体图谱
pB4cCGGW 载体载体序列
LOCUS Exported 11904 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Gateway vector pB4cCGGW DNA, complete sequence.
ACCESSION AB830546
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 11904)
AUTHORS Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa
T, Mano S.
TITLE Gateway Vectors for Simultaneous Detection of Multiple
Protein-Protein Interactions in Plant Cells Using Bimolecular
Fluorescence Complementation
JOURNAL PLoS ONE 11 (8), E0160717 (2016)
PUBMED 27490375
REFERENCE 2 (bases 1 to 11904)
AUTHORS Mano S, Nakagawa T.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2013) Contact:Shoji Mano National Institute for
Basic Biology, Department of Cell Biology; 38 Nishigonaka, Myodaiji,
Okazaki, Aichi 444-8585, Japan
REFERENCE 3 (bases 1 to 11904)
AUTHORS .
TITLE Direct Submission
COMMENT These colnes were obtained at our laboratory.
FEATURES Location/Qualifiers
source 1..11904
/organism="Gateway vector pB4cCGGW"
/mol_type="other DNA"
/db_xref="taxon:1356419"
misc_feature 114..138
/label=T-DNA right border
/note="T-DNA right border"
primer_bind 341..357
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 385..1219
/regulatory_class="promoter"
/note="35S promoter"
promoter 872..1217
/label=CaMV 35S promoter
/note="strong constitutive promoter from cauliflower mosaic
virus"
misc_feature 1238..1435
/label=cecfp
/note="cecfp"
misc_feature complement(1445..1569)
/label=attR1
/note="attR1"
protein_bind 1445..1569
/gene="mutant version of attR"
/label=attR1
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
promoter 1622..1652
/label=lac UV5 promoter
/note="E. coli lac promoter with an ""up"" mutation"
CDS 1706..2365
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=cat
/protein_id="BAV44483.1"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHSCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
gene 1706..2365
/gene="cat"
/label=cat
CDS 2707..3012
/codon_start=1
/gene="ccdB"
/label=ccdB
/protein_id="BAV44484.1"
/translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK
VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI"
gene 2707..3012
/gene="ccdB"
/label=ccdB
misc_feature 3053..3177
/label=attR2
/note="attR2"
protein_bind complement(3053..3177)
/gene="mutant version of attR"
/label=attR2
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
regulatory 3187..3596
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3203..3455
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(3489..3505)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3513..3529
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3537..3567)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3582..3603
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
regulatory complement(3630..3889)
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3637..3889
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
CDS complement(4279..5073)
/codon_start=1
/gene="nptII"
/product="neomycin phosphotransferase II"
/label=nptII
/protein_id="BAV44485.1"
/translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP
VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS
SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ
GLAPAELFARLKARMPDGDDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA
LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF"
gene complement(4279..5073)
/gene="nptII"
/label=nptII
regulatory complement(5086..5392)
/regulatory_class="promoter"
/note="NOS promoter"
promoter complement(5094..5277)
/function="NOS promoter"
/label=NOS promoter
/note="nopaline synthase promoter"
promoter complement(5130..5309)
/label=NOS promoter
/note="nopaline synthase promoter"
misc_feature 5483..5507
/label=T-DNA left border
/note="T-DNA left border"
CDS 6035..6826
/codon_start=1
/gene="aadA"
/product="aminoglycoside adenylyltransferase (Murphy,
1985)"
/label=SmR
/note="confers resistance to spectinomycin and
streptomycin"
/translation="MGEAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
rep_origin 7070..7658
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
misc_feature 7844..7984
/label=bom
/note="basis of mobility region from pBR322"
rep_origin 8328..8522
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
CDS complement(8588..9655)
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
CDS complement(10089..10718)
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"
Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa T, Mano S.
pB4cCGGW 载体载体图谱
pB4cCGGW 载体载体序列
LOCUS Exported 11904 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Gateway vector pB4cCGGW DNA, complete sequence.
ACCESSION AB830546
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 11904)
AUTHORS Kamigaki A, Nito K, Hikino K, Goto-Yamada S, Nishimura M, Nakagawa
T, Mano S.
TITLE Gateway Vectors for Simultaneous Detection of Multiple
Protein-Protein Interactions in Plant Cells Using Bimolecular
Fluorescence Complementation
JOURNAL PLoS ONE 11 (8), E0160717 (2016)
PUBMED 27490375
REFERENCE 2 (bases 1 to 11904)
AUTHORS Mano S, Nakagawa T.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2013) Contact:Shoji Mano National Institute for
Basic Biology, Department of Cell Biology; 38 Nishigonaka, Myodaiji,
Okazaki, Aichi 444-8585, Japan
REFERENCE 3 (bases 1 to 11904)
AUTHORS .
TITLE Direct Submission
COMMENT These colnes were obtained at our laboratory.
FEATURES Location/Qualifiers
source 1..11904
/organism="Gateway vector pB4cCGGW"
/mol_type="other DNA"
/db_xref="taxon:1356419"
misc_feature 114..138
/label=T-DNA right border
/note="T-DNA right border"
primer_bind 341..357
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 385..1219
/regulatory_class="promoter"
/note="35S promoter"
promoter 872..1217
/label=CaMV 35S promoter
/note="strong constitutive promoter from cauliflower mosaic
virus"
misc_feature 1238..1435
/label=cecfp
/note="cecfp"
misc_feature complement(1445..1569)
/label=attR1
/note="attR1"
protein_bind 1445..1569
/gene="mutant version of attR"
/label=attR1
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
promoter 1622..1652
/label=lac UV5 promoter
/note="E. coli lac promoter with an ""up"" mutation"
CDS 1706..2365
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=cat
/protein_id="BAV44483.1"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHSCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
gene 1706..2365
/gene="cat"
/label=cat
CDS 2707..3012
/codon_start=1
/gene="ccdB"
/label=ccdB
/protein_id="BAV44484.1"
/translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDK
VSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI"
gene 2707..3012
/gene="ccdB"
/label=ccdB
misc_feature 3053..3177
/label=attR2
/note="attR2"
protein_bind complement(3053..3177)
/gene="mutant version of attR"
/label=attR2
/bound_moiety="LR Clonase(TM)"
/note="recombination site for the Gateway(R) LR reaction"
regulatory 3187..3596
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3203..3455
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(3489..3505)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 3513..3529
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(3537..3567)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 3582..3603
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
regulatory complement(3630..3889)
/regulatory_class="terminator"
/note="NOS terminator"
terminator 3637..3889
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
CDS complement(4279..5073)
/codon_start=1
/gene="nptII"
/product="neomycin phosphotransferase II"
/label=nptII
/protein_id="BAV44485.1"
/translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP
VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS
SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ
GLAPAELFARLKARMPDGDDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA
LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF"
gene complement(4279..5073)
/gene="nptII"
/label=nptII
regulatory complement(5086..5392)
/regulatory_class="promoter"
/note="NOS promoter"
promoter complement(5094..5277)
/function="NOS promoter"
/label=NOS promoter
/note="nopaline synthase promoter"
promoter complement(5130..5309)
/label=NOS promoter
/note="nopaline synthase promoter"
misc_feature 5483..5507
/label=T-DNA left border
/note="T-DNA left border"
CDS 6035..6826
/codon_start=1
/gene="aadA"
/product="aminoglycoside adenylyltransferase (Murphy,
1985)"
/label=SmR
/note="confers resistance to spectinomycin and
streptomycin"
/translation="MGEAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPH
SDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAK
RELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLF
EALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQP
VILEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
rep_origin 7070..7658
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
misc_feature 7844..7984
/label=bom
/note="basis of mobility region from pBR322"
rep_origin 8328..8522
/label=pVS1 oriV
/note="origin of replication for the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
CDS complement(8588..9655)
/codon_start=1
/product="replication protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 RepA
/translation="GRKPSGPVQIGAALGDDLVEKLKAAQAAQRQRIEAEARPGESWQA
AADRIRKESRQPPAAGAPSIRKPPKGDEQPDFFVPMLYDVGTRDSRSIMDVAVFRLSKR
DRRAGEVIRYELPDGHVEVSAGPAGMASVWDYDLVLMAVSHLTESMNRYREGKGDKPGR
VFRPHVADVLKFCRRADGGKQKDDLVETCIRLNTTHVAMQRTKKAKNGRLVTVSEGEAL
ISRYKIVKSETGRPEYIEIELADWMYREITEGKNPDVLTVHPDYFLIDPGIGRFLYRLA
RRAAGKAEARWLFKTIYERSGSAGEFKKFCFTVRKLIGSNDLPEYDLKEEAGQAGPILV
MRYRNLIEGEASAGS"
CDS complement(10089..10718)
/codon_start=1
/product="stability protein from the Pseudomonas plasmid
pVS1 (Heeb et al., 2000)"
/label=pVS1 StaA
/translation="MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSAR
DWAAVREDQPLTVVGIDRPTIDRDVKAIGRRDFVVIDGAPQAADLAVSAIKAADFVLIP
VQPSPYDIWATADLVELVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVAEALAGYELPI
LESRITQRVSYPGTAAAGTTVLESEPEGDAAREVQALAAEIKSKLI"