LOCUS Exported 10160 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pAPG1, complete sequence.
ACCESSION KJ814975
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 10160)
AUTHORS Kang MK, Eom JH, Kim Y, Um Y, Woo HM.
TITLE Biosynthesis of pinene from glucose using metabolically-engineered
Corynebacterium glutamicum
JOURNAL Biotechnol. Lett. (2014) In press
PUBMED 24930112
REFERENCE 2 (bases 1 to 10160)
AUTHORS Woo HM.
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2014) Clean Energy Research Center, Korea
Institute of Science and Technology, Hwarangno 14-gil 5,
Seongbuk-gu, Seoul 136-791, Korea
REFERENCE 3 (bases 1 to 10160)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..10160
/organism="Expression vector pAPG1"
/host="Corynebacterium glutamicum"
/mol_type="other DNA"
/db_xref="taxon:1520898"
regulatory 226..294
/regulatory_class="promoter"
/note="pTrc"
promoter 266..294
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 302..318
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 370..2256
/codon_start=1
/product="pinene synthase"
/label=pinene synthase
/note="monoterpene synthase AgPS; codon-optimized for C.
glutamicum"
/protein_id="AIF29194.1"
/translation="MALVSTAPLASKSCLHKSLISSTHELKALSRTIPALGMSRRGKSI
TPSISMSSTTVVTDDGVRRRMGDFHSNLWDDDVIQSLPTAYEEKSYLERAEKLIGEVKN
MFNSMSLEDGELMSPLNDLIQRLWIVDSLERLGIHRHFKDEIKSALDYVYSYWGENGIG
CGRESVVTDLNSTALGLRTLRLHGYPVSSDVFKAFKGQNGQFSCSENIQTDEEIRGVLN
LFRASLIAFPGEKIMDEAEIFSTKYLKEALQKIPVSSLSREIGDVLEYGWHTYLPRLEA
RNYIQVFGQDTENTKSYVKSKKLLELAKLEFNIFQSLQKRELESLVRWWKESGFPEMTF
CRHRHVEYYTLASCIAFEPQHSGFRLGFAKTCHLITVLDDMYDTFGTVDELELFTATMK
RWDPSSIDCLPEYMKGVYIAVYDTVNEMAREAEEAQGRDTLTYAREAWEAYIDSYMQEA
RWIATGYLPSFDEYYENGKVSCGHRISALQPILTMDIPFPDHILKEVDFPSKLNDLACA
ILRLRGDTRCYKADRARGEEASSISCYMKDNPGVSEEDALDHINAMISDVIKGLNWELL
KPDINVPISAKKHAFDIARAFHYGYKYRDGYSVANVETKSLVTRTLLESVPL"
RBS 2263..2274
/note="strong bacterial ribosome binding site (Elowitz and
Leibler, 2000)"
CDS 2281..3432
/codon_start=1
/product="geranyl diphosphate synthase"
/label=geranyl diphosphate synthase
/note="prenyltransferase AgGPPS1; codon-optimized for C.
glutamicum"
/protein_id="AIF29195.1"
/translation="MAYSCMAASCHGLHFMNIASQECNLKRGIIPSKRLHGISSSLWAS
NGFQGHLERDLSAYRHLVSSSRCLNTIAMLSNLSEQAKEKATEFDFKEYLHSKAISVNE
ALERAVPLRYPEKIHEAMRYSLLAGGKRIRPILTIAACELVGGSEELAMPTACAMEMIH
TMSLIHDDLPSMDNDDLRRGKLTNHKVFGEGTAVLAGDALLSFAFEHIAVSTRKTVASH
RVLRVVSELGKAIGSQGVAGGQVADITSEGDPSVGLETLEWIHIHKTAVLLECAVVSGA
IIGGASENEIERTGRYARCVGLLFQVVDDILDVTRSSEELGKTAGKDLVSDKATYPKLM
GLEKAKEFADELLDRAKEELSCFNPAKAAPLLGLADYIALRQN"
terminator 3659..3745
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 3837..3864
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 3883..3974
/gene="bla"
/label=AmpR promoter
CDS complement(7919..8734)
/codon_start=1
/gene="aph(3)-Ia"
/product="aminoglycoside phosphotransferase"
/label=KanR
/note="confers resistance to kanamycin in bacteria or G418
(Geneticin(R)) in eukaryotes"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIADALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
rep_origin complement(9329..9874)
/direction=LEFT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."
LOCUS Exported 10160 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Expression vector pAPG1, complete sequence.
ACCESSION KJ814975
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 10160)
AUTHORS Kang MK, Eom JH, Kim Y, Um Y, Woo HM.
TITLE Biosynthesis of pinene from glucose using metabolically-engineered
Corynebacterium glutamicum
JOURNAL Biotechnol. Lett. (2014) In press
PUBMED 24930112
REFERENCE 2 (bases 1 to 10160)
AUTHORS Woo HM.
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2014) Clean Energy Research Center, Korea
Institute of Science and Technology, Hwarangno 14-gil 5,
Seongbuk-gu, Seoul 136-791, Korea
REFERENCE 3 (bases 1 to 10160)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..10160
/organism="Expression vector pAPG1"
/host="Corynebacterium glutamicum"
/mol_type="other DNA"
/db_xref="taxon:1520898"
regulatory 226..294
/regulatory_class="promoter"
/note="pTrc"
promoter 266..294
/label=tac promoter
/note="strong E. coli promoter; hybrid between the trp and
lac UV5 promoters"
protein_bind 302..318
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
CDS 370..2256
/codon_start=1
/product="pinene synthase"
/label=pinene synthase
/note="monoterpene synthase AgPS; codon-optimized for C.
glutamicum"
/protein_id="AIF29194.1"
/translation="MALVSTAPLASKSCLHKSLISSTHELKALSRTIPALGMSRRGKSI
TPSISMSSTTVVTDDGVRRRMGDFHSNLWDDDVIQSLPTAYEEKSYLERAEKLIGEVKN
MFNSMSLEDGELMSPLNDLIQRLWIVDSLERLGIHRHFKDEIKSALDYVYSYWGENGIG
CGRESVVTDLNSTALGLRTLRLHGYPVSSDVFKAFKGQNGQFSCSENIQTDEEIRGVLN
LFRASLIAFPGEKIMDEAEIFSTKYLKEALQKIPVSSLSREIGDVLEYGWHTYLPRLEA
RNYIQVFGQDTENTKSYVKSKKLLELAKLEFNIFQSLQKRELESLVRWWKESGFPEMTF
CRHRHVEYYTLASCIAFEPQHSGFRLGFAKTCHLITVLDDMYDTFGTVDELELFTATMK
RWDPSSIDCLPEYMKGVYIAVYDTVNEMAREAEEAQGRDTLTYAREAWEAYIDSYMQEA
RWIATGYLPSFDEYYENGKVSCGHRISALQPILTMDIPFPDHILKEVDFPSKLNDLACA
ILRLRGDTRCYKADRARGEEASSISCYMKDNPGVSEEDALDHINAMISDVIKGLNWELL
KPDINVPISAKKHAFDIARAFHYGYKYRDGYSVANVETKSLVTRTLLESVPL"
RBS 2263..2274
/note="strong bacterial ribosome binding site (Elowitz and
Leibler, 2000)"
CDS 2281..3432
/codon_start=1
/product="geranyl diphosphate synthase"
/label=geranyl diphosphate synthase
/note="prenyltransferase AgGPPS1; codon-optimized for C.
glutamicum"
/protein_id="AIF29195.1"
/translation="MAYSCMAASCHGLHFMNIASQECNLKRGIIPSKRLHGISSSLWAS
NGFQGHLERDLSAYRHLVSSSRCLNTIAMLSNLSEQAKEKATEFDFKEYLHSKAISVNE
ALERAVPLRYPEKIHEAMRYSLLAGGKRIRPILTIAACELVGGSEELAMPTACAMEMIH
TMSLIHDDLPSMDNDDLRRGKLTNHKVFGEGTAVLAGDALLSFAFEHIAVSTRKTVASH
RVLRVVSELGKAIGSQGVAGGQVADITSEGDPSVGLETLEWIHIHKTAVLLECAVVSGA
IIGGASENEIERTGRYARCVGLLFQVVDDILDVTRSSEELGKTAGKDLVSDKATYPKLM
GLEKAKEFADELLDRAKEELSCFNPAKAAPLLGLADYIALRQN"
terminator 3659..3745
/gene="Escherichia coli rrnB"
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 3837..3864
/label=rrnB T2 terminator
/note="transcription terminator T2 from the E. coli rrnB
gene"
promoter 3883..3974
/gene="bla"
/label=AmpR promoter
CDS complement(7919..8734)
/codon_start=1
/gene="aph(3)-Ia"
/product="aminoglycoside phosphotransferase"
/label=KanR
/note="confers resistance to kanamycin in bacteria or G418
(Geneticin(R)) in eukaryotes"
/translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
TAFQVLEEYPDSGENIADALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
rep_origin complement(9329..9874)
/direction=LEFT
/label=p15A ori
/note="Plasmids containing the medium-copy-number p15A
origin of replication can be propagated in E. coli cells
that contain a second plasmid with the ColE1 origin."