LOCUS       Exported                7034 bp ds-DNA     circular SYN 17-DEC-2018
DEFINITION  Cloning vector pAAV-9(5)hSyn-EGFP-NRSEdsRNA, complete sequence.
ACCESSION   HQ416704
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7034)
  AUTHORS   Koch JC, Barski E, Lingor P, Bahr M, Michel U.
  TITLE     Plasmids containing NRSE/RE1 sites enhance neurite outgrowth of 
            retinal ganglion cells via sequestration of REST independent of NRSE
            dsRNA expression
  JOURNAL   FEBS J. 278 (18), 3472-3483 (2011)
  PUBMED    21790997
REFERENCE   2  (bases 1 to 7034)
  AUTHORS   Koch JC, Michel U.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2010) Neurology, University Medicine Goettingen, 
            Robert-Koch-Str. 40, Goettingen, Niedersachsen 37075, Germany
REFERENCE   3  (bases 1 to 7034)
  AUTHORS   .
  TITLE     Direct Submission
FEATURES             Location/Qualifiers
     source          1..7034
                     /organism="Cloning vector pAAV-9(5)hSyn-EGFP-NRSEdsRNA"
                     /mol_type="other DNA"
                     /note="derived from the sequence of INSD accession 
                     AY640633"
                     /db_xref="taxon:1007533"
     polyA_signal    51..185
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     intron          199..342
                     /note="chimeric intron"
     intron          201..334
                     /label=chimeric intron
                     /note="chimera between introns from human beta-globin and 
                     immunoglobulin heavy chain genes"
     CDS             complement(346..1065)
                     /codon_start=1
                     /gene="EGFP"
                     /product="enhanced green fluorescent protein"
                     /label=EGFP
                     /protein_id="AEJ82524.1"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     gene            complement(346..1065)
                     /gene="EGFP"
                     /label=EGFP
     regulatory      1062..1071
                     /regulatory_class="other"
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
     regulatory      1102..1571
                     /regulatory_class="promoter"
                     /note="human synapsin promoter (hSyn)"
     promoter        complement(1108..1555)
                     /label=hSyn promoter
                     /note="human synapsin I promoter; confers neuron-specific 
                     expression (Kugler et al., 2003)"
     regulatory      1583..1798
                     /regulatory_class="promoter"
                     /note="human H1 promoter (H1)"
     promoter        1583..1797
                     /label=H1 promoter
                     /note="human H1 RNA promoter"
     misc_feature    1799..1866
                     /label=NRSE double-stranded RNA
                     /note="NRSE double-stranded RNA"
     misc_feature    1871..4134
                     /label=partial sequence of porcine non-coding RNA 9(5)
                     /note="partial sequence of porcine non-coding RNA 9(5)"
     misc_feature    4154..4294
                     /label=right ITR from AAV2
                     /note="right ITR from AAV2"
     repeat_region   4154..4294
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"
     rep_origin      4369..4824
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     promoter        5106..5210
                     /gene="bla"
                     /label=AmpR promoter
     CDS             5211..6071
                     /codon_start=1
                     /gene="amp"
                     /product="ampicillin resistance protein"
                     /label=amp
                     /protein_id="AEJ82525.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     gene            5211..6071
                     /gene="amp"
                     /label=amp
     rep_origin      6242..6830
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     misc_feature    6892..7032
                     /label=left ITR from AAV2
                     /note="left ITR from AAV2"
     repeat_region   6892..7032
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"