LOCUS Exported 9583 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Sequencing vector pAA3.7X, complete sequence.
ACCESSION M11320
VERSION .
KEYWORDS complete genome.
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 9583)
AUTHORS Ahmed A.
TITLE A rapid procedure for DNA sequencing using transposon-promoted
deletions in Escherichia coli
JOURNAL Gene 39 (2-3), 305-310 (1985)
PUBMED 3005115
REFERENCE 2 (bases 1 to 9583)
AUTHORS Ahmed A.
TITLE Sequencing with transposon-promoted deletions: Use of
transposon-promoted deletions in DNA sequence analysis
JOURNAL (in) Wu,R. and Grossman,L. (Eds.); METHODS IN ENZYMOLOGY,
RECOMBINANT DNA, PART E; Academic Press, New York (1986)
REFERENCE 3 (bases 1 to 9583)
AUTHORS .
TITLE Direct Submission
COMMENT [2] revises [1].
Sequence in computer readable form and reprints for [1],[(in) Wu,R.
and Grossman,L., (Eds.);Methods in Enzymology, Recombinant DNA, part
] and [2]
kindly provided by A.Ahmed, 31-MAR-1986.
[1] describes a new quick sequencing method, which involves the
subdivision of the DNA fragment to be sequenced into many
overlapping segments by a series of deletions which start from a
fixed site. Since the different segments retain their natural
connectedness, the complete sequence is easily assembled from
overlaps that occur between the sequences of adjacent deletions. A
simple and rapid method for the isolation of transposon-promoted
deletions and their use in sequencing long DNA fragments was
developed.
FEATURES Location/Qualifiers
source 1..9583
/organism="Sequencing vector pAA3.7X"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2517"
CDS 2927..4117
/codon_start=1
/gene="tet"
/product="tetracycline efflux protein"
/label=TcR
/note="confers resistance to tetracycline"
/translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHY
GVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRI
VAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPF
LAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIM
QLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAII
AGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSL
AALTSLTSIIGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST"
CDS 4758..4949
/codon_start=1
/gene="rop"
/product="Rop protein, which maintains plasmids at low copy
number"
/label=rop
/translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
DELYRSCLARFGDDGENL"
misc_feature 5051..5191
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(5377..5965)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(6136..6996)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(6997..7101)
/gene="bla"
/label=AmpR promoter
mobile_element 7122..7889
/mobile_element_type="insertion sequence:IS1"
/note="prokaryotic transposable element"
promoter 8010..8112
/label=cat promoter
/note="promoter of the E. coli cat gene encoding
chloramphenicol acetyltransferase"
CDS 8113..8772
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=CmR
/note="confers resistance to chloramphenicol"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
LOCUS Exported 9583 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Sequencing vector pAA3.7X, complete sequence.
ACCESSION M11320
VERSION .
KEYWORDS complete genome.
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 9583)
AUTHORS Ahmed A.
TITLE A rapid procedure for DNA sequencing using transposon-promoted
deletions in Escherichia coli
JOURNAL Gene 39 (2-3), 305-310 (1985)
PUBMED 3005115
REFERENCE 2 (bases 1 to 9583)
AUTHORS Ahmed A.
TITLE Sequencing with transposon-promoted deletions: Use of
transposon-promoted deletions in DNA sequence analysis
JOURNAL (in) Wu,R. and Grossman,L. (Eds.); METHODS IN ENZYMOLOGY,
RECOMBINANT DNA, PART E; Academic Press, New York (1986)
REFERENCE 3 (bases 1 to 9583)
AUTHORS .
TITLE Direct Submission
COMMENT [2] revises [1].
Sequence in computer readable form and reprints for [1],[(in) Wu,R.
and Grossman,L., (Eds.);Methods in Enzymology, Recombinant DNA, part
] and [2]
kindly provided by A.Ahmed, 31-MAR-1986.
[1] describes a new quick sequencing method, which involves the
subdivision of the DNA fragment to be sequenced into many
overlapping segments by a series of deletions which start from a
fixed site. Since the different segments retain their natural
connectedness, the complete sequence is easily assembled from
overlaps that occur between the sequences of adjacent deletions. A
simple and rapid method for the isolation of transposon-promoted
deletions and their use in sequencing long DNA fragments was
developed.
FEATURES Location/Qualifiers
source 1..9583
/organism="Sequencing vector pAA3.7X"
/lab_host="Escherichia coli"
/mol_type="other DNA"
/db_xref="taxon:2517"
CDS 2927..4117
/codon_start=1
/gene="tet"
/product="tetracycline efflux protein"
/label=TcR
/note="confers resistance to tetracycline"
/translation="MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHY
GVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRI
VAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPF
LAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIM
QLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAII
AGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSL
AALTSLTSIIGPLIVTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST"
CDS 4758..4949
/codon_start=1
/gene="rop"
/product="Rop protein, which maintains plasmids at low copy
number"
/label=rop
/translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
DELYRSCLARFGDDGENL"
misc_feature 5051..5191
/label=bom
/note="basis of mobility region from pBR322"
rep_origin complement(5377..5965)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(6136..6996)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(6997..7101)
/gene="bla"
/label=AmpR promoter
mobile_element 7122..7889
/mobile_element_type="insertion sequence:IS1"
/note="prokaryotic transposable element"
promoter 8010..8112
/label=cat promoter
/note="promoter of the E. coli cat gene encoding
chloramphenicol acetyltransferase"
CDS 8113..8772
/codon_start=1
/gene="cat"
/product="chloramphenicol acetyltransferase"
/label=CmR
/note="confers resistance to chloramphenicol"
/translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS
LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"