LOCUS Exported 5431 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector p1enVT-lacI, complete sequence.
ACCESSION KX986156
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5431)
AUTHORS Boehm CR, Grant PK, Haseloff J.
TITLE Programmed emergence of a domain of gene expression in a bacterial
population
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5431)
AUTHORS Boehm CR.
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2016) Plant Sciences, University of Cambridge,
Downing Street, Cambridge, Cambridgeshire CB2 3EA, United Kingdom
REFERENCE 3 (bases 1 to 5431)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5431
/organism="Cloning vector p1enVT-lacI"
/mol_type="other DNA"
/db_xref="taxon:2049404"
rep_origin complement(49..637)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
misc_feature 818..902
/note="PT7 and transl. enh. RBS from pET3a (Rosenberg et
al. 1987)"
promoter 825..843
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
RBS 875..897
/note="efficient ribosome binding site from bacteriophage
T7 gene 10 (Olins and Rangwala, 1989)"
CDS 909..1628
/codon_start=1
/product="mVenus"
/label=mVenus
/protein_id="ATP60589.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KLICTTGKLPVPWPTLVTTLGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIK
ANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLL
EFVTAAGITLGMDELYK"
regulatory 1640..1768
/regulatory_class="terminator"
/note="BBa_B0015"
terminator 1648..1719
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 1735..1762
/label=T7Te terminator
/note="phage T7 early transcription terminator"
regulatory 1769..1803
/regulatory_class="promoter"
/note="PJ23101*"
misc_feature 1812..3119
/note="lacI_generator cassette; BBa_P0412"
RBS 1812..1823
/note="strong bacterial ribosome binding site (Elowitz and
Leibler, 2000)"
CDS 1839..2918
/codon_start=1
/gene="lacI"
/product="lac repressor"
/label=lacI
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
CDS 2919..2951
/codon_start=1
/product="C-terminal peptide that mediates degradation in
bacteria through the ClpXP and ClpAP proteases (McGinness
et al., 2006)"
/label=ssrA tag (LVA)
/note="mutant LVA variant that confers accelerated
degradation under some conditions (Andersen et al., 1998)"
/translation="AANDENYALVA"
terminator 2999..3070
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 3086..3113
/label=T7Te terminator
/note="phage T7 early transcription terminator"
misc_feature 3120..3140
/label=BioBrick suffix
/note="universal suffix for all parts"
CDS complement(3166..4023)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(4024..4128)
/gene="bla"
/label=AmpR promoter
terminator 4218..4261
/label=bacterial terminator
/note="putative bacterial transcription terminator"
misc_feature 4264..4285
/label=BioBrick prefix
/note="BioBrick prefix for parts that do not start with
""ATG"""
regulatory complement(4286..4414)
/regulatory_class="terminator"
/note="BBa_B0015"
terminator 4292..4319
/label=T7Te terminator
/note="phage T7 early transcription terminator"
terminator 4335..4406
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
CDS complement(4426..5145)
/codon_start=1
/product="mTurquoise2"
/label=mTurquoise2
/protein_id="ATP60590.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTLSWGVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYFSDNVYITADKQKNGIK
ANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
EFVTAAGITLGMDELYK"
regulatory complement(5146..5163)
/regulatory_class="ribosome_binding_site"
/note="BBa_B0034"
RBS 5152..5163
/note="strong bacterial ribosome binding site (Elowitz and
Leibler, 2000)"
regulatory complement(5172..5206)
/regulatory_class="promoter"
/note="pJ23101"
misc_feature 5207..5227
/label=BioBrick suffix
/note="universal suffix for all parts"
terminator 5228..5285
/label=his operon terminator
/note="This putative transcriptin terminator from the E.
coli his operon has a 2-bp deletion introduced during
synthesis. Its efficiency has not been determined."
LOCUS Exported 5431 bp ds-DNA circular SYN 18-DEC-2018
DEFINITION Cloning vector p1enVT-lacI, complete sequence.
ACCESSION KX986156
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5431)
AUTHORS Boehm CR, Grant PK, Haseloff J.
TITLE Programmed emergence of a domain of gene expression in a bacterial
population
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5431)
AUTHORS Boehm CR.
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2016) Plant Sciences, University of Cambridge,
Downing Street, Cambridge, Cambridgeshire CB2 3EA, United Kingdom
REFERENCE 3 (bases 1 to 5431)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5431
/organism="Cloning vector p1enVT-lacI"
/mol_type="other DNA"
/db_xref="taxon:2049404"
rep_origin complement(49..637)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
misc_feature 818..902
/note="PT7 and transl. enh. RBS from pET3a (Rosenberg et
al. 1987)"
promoter 825..843
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
RBS 875..897
/note="efficient ribosome binding site from bacteriophage
T7 gene 10 (Olins and Rangwala, 1989)"
CDS 909..1628
/codon_start=1
/product="mVenus"
/label=mVenus
/protein_id="ATP60589.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KLICTTGKLPVPWPTLVTTLGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIK
ANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLL
EFVTAAGITLGMDELYK"
regulatory 1640..1768
/regulatory_class="terminator"
/note="BBa_B0015"
terminator 1648..1719
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 1735..1762
/label=T7Te terminator
/note="phage T7 early transcription terminator"
regulatory 1769..1803
/regulatory_class="promoter"
/note="PJ23101*"
misc_feature 1812..3119
/note="lacI_generator cassette; BBa_P0412"
RBS 1812..1823
/note="strong bacterial ribosome binding site (Elowitz and
Leibler, 2000)"
CDS 1839..2918
/codon_start=1
/gene="lacI"
/product="lac repressor"
/label=lacI
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
/translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
ALADSLMQLARQVSRLESGQ"
CDS 2919..2951
/codon_start=1
/product="C-terminal peptide that mediates degradation in
bacteria through the ClpXP and ClpAP proteases (McGinness
et al., 2006)"
/label=ssrA tag (LVA)
/note="mutant LVA variant that confers accelerated
degradation under some conditions (Andersen et al., 1998)"
/translation="AANDENYALVA"
terminator 2999..3070
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
terminator 3086..3113
/label=T7Te terminator
/note="phage T7 early transcription terminator"
misc_feature 3120..3140
/label=BioBrick suffix
/note="universal suffix for all parts"
CDS complement(3166..4023)
/codon_start=1
/gene="bla"
/product="beta-lactamase"
/label=AmpR
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
promoter complement(4024..4128)
/gene="bla"
/label=AmpR promoter
terminator 4218..4261
/label=bacterial terminator
/note="putative bacterial transcription terminator"
misc_feature 4264..4285
/label=BioBrick prefix
/note="BioBrick prefix for parts that do not start with
""ATG"""
regulatory complement(4286..4414)
/regulatory_class="terminator"
/note="BBa_B0015"
terminator 4292..4319
/label=T7Te terminator
/note="phage T7 early transcription terminator"
terminator 4335..4406
/label=rrnB T1 terminator
/note="transcription terminator T1 from the E. coli rrnB
gene"
CDS complement(4426..5145)
/codon_start=1
/product="mTurquoise2"
/label=mTurquoise2
/protein_id="ATP60590.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTLSWGVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYFSDNVYITADKQKNGIK
ANFKIRHNIEDGGVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
EFVTAAGITLGMDELYK"
regulatory complement(5146..5163)
/regulatory_class="ribosome_binding_site"
/note="BBa_B0034"
RBS 5152..5163
/note="strong bacterial ribosome binding site (Elowitz and
Leibler, 2000)"
regulatory complement(5172..5206)
/regulatory_class="promoter"
/note="pJ23101"
misc_feature 5207..5227
/label=BioBrick suffix
/note="universal suffix for all parts"
terminator 5228..5285
/label=his operon terminator
/note="This putative transcriptin terminator from the E.
coli his operon has a 2-bp deletion introduced during
synthesis. Its efficiency has not been determined."