LOCUS Exported 4227 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector GmubiSINC-pFLEV, complete sequence.
ACCESSION KX814445
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4227)
AUTHORS Grant TN, De La Torre CM, Zhang N, Finer JJ.
TITLE Synthetic introns help identify sequences in the 5 UTR intron of
the Glycine max polyubiquitin (Gmubi) promoter that give increased
promoter activity
JOURNAL Planta (2017) In press
PUBMED 28070655
REFERENCE 2 (bases 1 to 4227)
AUTHORS Finer J, Grant T, De La Torre C, Zhang N.
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2016) Horticulture and Crop Science, Ohio State
University, 1680 Madison Ave, Wooster, OH 44691, USA
REFERENCE 3 (bases 1 to 4227)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4227
/organism="Cloning vector GmubiSINC-pFLEV"
/mol_type="other DNA"
/db_xref="taxon:1955484"
primer_bind 379..395
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 412..973
/regulatory_class="promoter"
/note="GmubiSINC synthetic promoter"
CDS 974..1693
/codon_start=1
/product="sGFP65T"
/label=sGFP65T
/protein_id="AQM73598.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTFTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
EFVTAAGITHGMDELYK"
regulatory 1712..1987
/regulatory_class="terminator"
/note="NOS terminator"
terminator 1712..1964
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(2006..2022)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 2030..2046
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(2054..2084)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2099..2120
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(2408..2996)
/direction=LEFT
CDS complement(3167..4027)
/codon_start=1
/gene="ampR"
/product="ampicillin resistance protein"
/label=ampR
/protein_id="AQM73597.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(3167..4027)
/gene="ampR"
/label=ampR
promoter complement(4028..4132)
/gene="bla"
/label=AmpR promoter
LOCUS Exported 4227 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Cloning vector GmubiSINC-pFLEV, complete sequence.
ACCESSION KX814445
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 4227)
AUTHORS Grant TN, De La Torre CM, Zhang N, Finer JJ.
TITLE Synthetic introns help identify sequences in the 5 UTR intron of
the Glycine max polyubiquitin (Gmubi) promoter that give increased
promoter activity
JOURNAL Planta (2017) In press
PUBMED 28070655
REFERENCE 2 (bases 1 to 4227)
AUTHORS Finer J, Grant T, De La Torre C, Zhang N.
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2016) Horticulture and Crop Science, Ohio State
University, 1680 Madison Ave, Wooster, OH 44691, USA
REFERENCE 3 (bases 1 to 4227)
AUTHORS .
TITLE Direct Submission
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4227
/organism="Cloning vector GmubiSINC-pFLEV"
/mol_type="other DNA"
/db_xref="taxon:1955484"
primer_bind 379..395
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
regulatory 412..973
/regulatory_class="promoter"
/note="GmubiSINC synthetic promoter"
CDS 974..1693
/codon_start=1
/product="sGFP65T"
/label=sGFP65T
/protein_id="AQM73598.1"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTFTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
EFVTAAGITHGMDELYK"
regulatory 1712..1987
/regulatory_class="terminator"
/note="NOS terminator"
terminator 1712..1964
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(2006..2022)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind 2030..2046
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(2054..2084)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 2099..2120
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(2408..2996)
/direction=LEFT
CDS complement(3167..4027)
/codon_start=1
/gene="ampR"
/product="ampicillin resistance protein"
/label=ampR
/protein_id="AQM73597.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene complement(3167..4027)
/gene="ampR"
/label=ampR
promoter complement(4028..4132)
/gene="bla"
/label=AmpR promoter