LOCUS Exported 5667 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Transient expression vector pBI221, complete sequence.
ACCESSION AF502128
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5667)
AUTHORS Chen PY, Wang CK, Soong SC, To KY.
TITLE Complete sequence of the binary vector pBI121 and its application in
cloning T-DNA insertion from transgenic plants
JOURNAL Mol. Breed. 11, 287-293 (2003)
REFERENCE 2 (bases 1 to 5667)
AUTHORS Chen PY, Wang CK, To KY.
TITLE Direct Submission
JOURNAL Submitted (12-APR-2002) Institute of Bioagricultural Sciences,
Academia Sinica, Taipei 11529, Taiwan
REFERENCE 3 (bases 1 to 5667)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5667
/organism="Transient expression vector pBI221"
/mol_type="genomic DNA"
/note="HindIII-EcoRI fragment (3032 bp) carrying CaMV 35S
promoter, GUS coding region and nos terminator was digested
from the binary vector pBI121 and ligated with cloning
vector pUC19, which was previously digested with HindIII
and EcoRI; binary vector pBI121 sequence is deposited in
GenBank Accession Number AF485783; plasmids pBI121 and
pBI221 were purchased from Clontech Laboratories, Palo
Alto, CA, USA"
/db_xref="taxon:193296"
regulatory 25..859
/regulatory_class="promoter"
/note="CaMV 35S promoter"
promoter 512..857
/label=CaMV 35S promoter
/note="strong constitutive promoter from cauliflower mosaic
virus"
CDS 896..2707
/codon_start=1
/gene="gusA"
/product="beta-glucuronidase"
/label=gusA
/protein_id="AAM22211.1"
/translation="MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRAI
AVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEV
MEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHD
FFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQ
VVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQF
LINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDW
ADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARD
KNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISD
LFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSMY
TDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRK
PKSAAFLLQKRWTGMNFGEKPQQGGKQ"
gene 896..2707
/gene="gusA"
/label=gusA
regulatory 2778..3030
/regulatory_class="terminator"
/note="nos terminator"
terminator 2778..3030
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(3039..3055)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 3529..3633
/gene="bla"
/label=AmpR promoter
CDS 3634..4494
/codon_start=1
/gene="amp"
/product="beta-lactamase"
/label=amp
/protein_id="AAM22212.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene 3634..4494
/gene="amp"
/label=amp
rep_origin 4642..5285
/label=pUC19 plasmid replication origin
/note="pUC19 plasmid replication origin"
rep_origin 4665..5253
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
protein_bind 5541..5562
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 5577..5607
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 5615..5631
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 5639..5655
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
LOCUS Exported 5667 bp ds-DNA circular SYN 17-DEC-2018
DEFINITION Transient expression vector pBI221, complete sequence.
ACCESSION AF502128
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 5667)
AUTHORS Chen PY, Wang CK, Soong SC, To KY.
TITLE Complete sequence of the binary vector pBI121 and its application in
cloning T-DNA insertion from transgenic plants
JOURNAL Mol. Breed. 11, 287-293 (2003)
REFERENCE 2 (bases 1 to 5667)
AUTHORS Chen PY, Wang CK, To KY.
TITLE Direct Submission
JOURNAL Submitted (12-APR-2002) Institute of Bioagricultural Sciences,
Academia Sinica, Taipei 11529, Taiwan
REFERENCE 3 (bases 1 to 5667)
AUTHORS .
TITLE Direct Submission
FEATURES Location/Qualifiers
source 1..5667
/organism="Transient expression vector pBI221"
/mol_type="genomic DNA"
/note="HindIII-EcoRI fragment (3032 bp) carrying CaMV 35S
promoter, GUS coding region and nos terminator was digested
from the binary vector pBI121 and ligated with cloning
vector pUC19, which was previously digested with HindIII
and EcoRI; binary vector pBI121 sequence is deposited in
GenBank Accession Number AF485783; plasmids pBI121 and
pBI221 were purchased from Clontech Laboratories, Palo
Alto, CA, USA"
/db_xref="taxon:193296"
regulatory 25..859
/regulatory_class="promoter"
/note="CaMV 35S promoter"
promoter 512..857
/label=CaMV 35S promoter
/note="strong constitutive promoter from cauliflower mosaic
virus"
CDS 896..2707
/codon_start=1
/gene="gusA"
/product="beta-glucuronidase"
/label=gusA
/protein_id="AAM22211.1"
/translation="MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRAI
AVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEV
MEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHD
FFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRDADQQ
VVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAVKGEQF
LINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDW
ADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARD
KNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISD
LFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSMY
TDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRK
PKSAAFLLQKRWTGMNFGEKPQQGGKQ"
gene 896..2707
/gene="gusA"
/label=gusA
regulatory 2778..3030
/regulatory_class="terminator"
/note="nos terminator"
terminator 2778..3030
/label=NOS terminator
/note="nopaline synthase terminator and poly(A) signal"
primer_bind complement(3039..3055)
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 3529..3633
/gene="bla"
/label=AmpR promoter
CDS 3634..4494
/codon_start=1
/gene="amp"
/product="beta-lactamase"
/label=amp
/protein_id="AAM22212.1"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"
gene 3634..4494
/gene="amp"
/label=amp
rep_origin 4642..5285
/label=pUC19 plasmid replication origin
/note="pUC19 plasmid replication origin"
rep_origin 4665..5253
/direction=RIGHT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
protein_bind 5541..5562
/label=CAP binding site
/bound_moiety="E. coli catabolite activator protein"
/note="CAP binding activates transcription in the presence
of cAMP."
promoter 5577..5607
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind 5615..5631
/label=lac operator
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
primer_bind 5639..5655
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"